General information for g15759.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aldo-keto reductase family 1 member B1.
Parent gene
- The parent gene g15759 is located on chr_4: 6682142..6683885 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15759 | g15759.t3 | isoform | g15759.t3 | 6681124 | 6682052 |
| chr_4 | g15759 | g15759.t3 | exon | g15759.t3.exon1 | 6681124 | 6681688 |
| chr_4 | g15759 | g15759.t3 | TTS | g15759.t3 | 6681153 | 6681153 |
| chr_4 | g15759 | g15759.t3 | cds | g15759.t3.CDS1 | 6681640 | 6681688 |
| chr_4 | g15759 | g15759.t3 | exon | g15759.t3.exon2 | 6681744 | 6681990 |
| chr_4 | g15759 | g15759.t3 | cds | g15759.t3.CDS2 | 6681744 | 6681967 |
| chr_4 | g15759 | g15759.t3 | exon | g15759.t3.exon3 | 6682046 | 6682052 |
| chr_4 | g15759 | g15759.t3 | TSS | g15759.t3 | NA | NA |
Sequences
>g15759.t3 Gene=g15759 Length=819
CCTTGGGCAAAACCAGATGATCCACAGCTCATGGATGATCCAAGAATTGTTGCTTTAGCA
GAAAAGTATCAAAAAACTCCAGCTCAAATTCTTATTCGGTATCAAATTCAACGTAGAGTT
GTTGTCATTCCTAAATCAGTCACAAAATCAAGAATCATTAGCAACTTTGATGTTTTTGGC
TTTGAATTATCTTCTGAAGATATTGCAAGTATCGATAGCATTGACTGCAATGGAAGATTG
TGTCATTTGAATTGGGTTTCTCATCATCCACATTATCCATTTGGAACAGACGTTGAATTT
TAAATATAAAAGTTTCAAAAAATATTAATTTTTTTATCAAAGTGCGAAAACGATCCGGAT
CCTTCTTCAATATCTCTGAAAATTCTTAAAGATCTTTTAAGAACTTGTAGTTTCTGCACC
TTGTATTTTACTTCTTTCAAATTTAATTGATTTAAATCACTGTTACAAAATTTGCCATTT
AAAATTTAATTTGATGGAAAATTACAAGTAAATGGTAAAAAGTTTTGTTGAAACTAAGAC
TTATTTGTAATAGTTTTAACAAACCTTCTTTTTAAATTTAGAATTTTTTCTTTTAAAGAA
CAGAAAAATTCAGAAGATTTGTCCAACTATTTTCCAACACTAACAATTTCTTTCTAATTT
TTTTTTTCAAATGAACAAAAATATTTTTTTTTTAATTTTTTTCAAAATAAAAATTTATTT
ACAAAATTGACTTTCATGAGACATTTGGTAAACTTAAAATTTTAATAAATGCAAAATATA
TTAACTTTTTAACTTTAACCTTTCAATAAAAAAATATTT
>g15759.t3 Gene=g15759 Length=90
MDDPRIVALAEKYQKTPAQILIRYQIQRRVVVIPKSVTKSRIISNFDVFGFELSSEDIAS
IDSIDCNGRLCHLNWVSHHPHYPFGTDVEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15759.t3 | Gene3D | G3DSA:3.20.20.100 | - | 1 | 88 | 2.3E-30 |
| 2 | g15759.t3 | PANTHER | PTHR11732:SF482 | ZGC:56622 | 1 | 84 | 1.3E-24 |
| 3 | g15759.t3 | PANTHER | PTHR11732 | ALDO/KETO REDUCTASE | 1 | 84 | 1.3E-24 |
| 1 | g15759.t3 | Pfam | PF00248 | Aldo/keto reductase family | 5 | 64 | 8.8E-9 |
| 5 | g15759.t3 | ProSitePatterns | PS00063 | Aldo/keto reductase family putative active site signature. | 33 | 48 | - |
| 4 | g15759.t3 | SUPERFAMILY | SSF51430 | NAD(P)-linked oxidoreductase | 2 | 84 | 2.88E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0047834 | D-threo-aldose 1-dehydrogenase activity | MF |
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed