Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15769 g15769.t1 TTS g15769.t1 6711620 6711620
chr_4 g15769 g15769.t1 isoform g15769.t1 6711628 6712790
chr_4 g15769 g15769.t1 exon g15769.t1.exon1 6711628 6711947
chr_4 g15769 g15769.t1 cds g15769.t1.CDS1 6711628 6711947
chr_4 g15769 g15769.t1 exon g15769.t1.exon2 6712210 6712377
chr_4 g15769 g15769.t1 cds g15769.t1.CDS2 6712210 6712377
chr_4 g15769 g15769.t1 exon g15769.t1.exon3 6712658 6712790
chr_4 g15769 g15769.t1 cds g15769.t1.CDS3 6712658 6712790
chr_4 g15769 g15769.t1 TSS g15769.t1 6712853 6712853

Sequences

>g15769.t1 Gene=g15769 Length=621
ATGACAAAATATAAGCTGACTTATTTTAATTTTGTTGCTCTTGGTGAGCCTATAAGATTT
TTATTATCTTATGGCGGTGTTGACTTTGAAGATAATCGAATTGAATGGAAAGATTGGCCT
GAAATTAAACCAACAACACCACTTCATCAAGTTCCAATTCTACAAATAGACAATGAAGTT
CTTTACCAAACAATTCCAATTTGTCGTTATTTGGGTGCAAAGTTTAACCTAACAGGCGCC
GATGATTTTGAGAATTATAAACTCGACAATTGCGTGCAAACAATAACAGACCTACGAATG
AAAATCGAAATGGTAGCATGGGATAAATCCTCACCACAAAATTTTATTGATGAGAAACGA
GCTGAACTTTTAAATAAAACTATTCCATTTTATTTGGAAAATCTTGAAAAAATTGCTGTT
AAAAGTGGAAGTGGATATTTGGCATCATCAAAATTTTCATGGGCTGATCTTTATTTTGTG
CCAATGATTGAATACATGAATTTTATGATGAAAACAAATTTACTGGAAGAATATGAAAAT
TTAAAGAAAGTTTATGAAAATGTCATGAAAATTGAAAGTATTAAAAATTATGTTGCTAAA
AGACCAACACAGGGAAATTGA

>g15769.t1 Gene=g15769 Length=206
MTKYKLTYFNFVALGEPIRFLLSYGGVDFEDNRIEWKDWPEIKPTTPLHQVPILQIDNEV
LYQTIPICRYLGAKFNLTGADDFENYKLDNCVQTITDLRMKIEMVAWDKSSPQNFIDEKR
AELLNKTIPFYLENLEKIAVKSGSGYLASSKFSWADLYFVPMIEYMNFMMKTNLLEEYEN
LKKVYENVMKIESIKNYVAKRPTQGN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g15769.t1 CDD cd03039 GST_N_Sigma_like 4 72 1.50288E-28
10 g15769.t1 CDD cd03192 GST_C_Sigma_like 84 188 2.02988E-22
9 g15769.t1 Coils Coil Coil 171 191 -
8 g15769.t1 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 200 2.8E-63
7 g15769.t1 Gene3D G3DSA:1.20.1050.10 - 76 190 2.8E-63
3 g15769.t1 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 3 203 4.5E-61
4 g15769.t1 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 3 203 4.5E-61
1 g15769.t1 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 72 4.2E-8
2 g15769.t1 Pfam PF14497 Glutathione S-transferase, C-terminal domain 97 201 1.3E-18
13 g15769.t1 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 25.352
12 g15769.t1 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 81 206 17.778
14 g15769.t1 SFLD SFLDG01205 AMPS.1 1 204 0.0
15 g15769.t1 SFLD SFLDG00363 AMPS (cytGST): Alpha-, Mu-, Pi-, and Sigma-like 1 204 0.0
5 g15769.t1 SUPERFAMILY SSF52833 Thioredoxin-like 3 76 7.78E-20
6 g15769.t1 SUPERFAMILY SSF47616 GST C-terminal domain-like 77 202 6.54E-24

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values