Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15778 g15778.t4 isoform g15778.t4 6766494 6767905
chr_4 g15778 g15778.t4 exon g15778.t4.exon1 6766494 6767773
chr_4 g15778 g15778.t4 cds g15778.t4.CDS1 6766631 6767200
chr_4 g15778 g15778.t4 exon g15778.t4.exon2 6767830 6767905
chr_4 g15778 g15778.t4 TTS g15778.t4 6768928 6768928
chr_4 g15778 g15778.t4 TSS g15778.t4 NA NA

Sequences

>g15778.t4 Gene=g15778 Length=1356
TATTTTCATGGATACTTTATGCAGGTTCAAGGTATTTCACTGAAGTTTTAACTCTTGGTA
GTTCAACATTGCCAGCATTTGCAAGAAAAGAAGCCGAAGGTTTTGCTTTTATTAGCATTG
ACAAAGAAGAATTTTTAATGCAAAATTTCAGTGATAATTCAGAATACGACAGCAGTTATA
GTTTGAGACATCTAAAAGAACAAGTAACAGTACATCAATTTAATCAACTTATTTATTGTA
GTCTTGTTGGTATTCAAATTGTCATTCGTGGTTATTACATGGAATTTAATAATTATTTCA
AAGAATTTTTGCCTCAAGCTTTTCATCGATTTATTTTTGAATCAAGCAAATATGTTTCAG
CTCAAAAATGTAGAATTTTAACTTTGCCAGCTGATGCTACAATTCCATCACATAATAACA
TTTGCAGAATTGATTTTATTGATGACCATCAAATTTATATCAAATGCAATGTTGATATTC
CAAGCAAACCACCAGCATTGATGACAAAAATTTTAAATGCTGTCGATGAAAAACTTTTCT
CGAATCACACAATGTATAAATTTGTGCAAGCATTAGTTGAAGAGTGGAAAAATAAAATAA
TTTGTTTGTCACATCAGCATGATCATGATGTATCGAAGCTGAAGAAAGTGTTGGGAATTC
AACAAAATGATGAACTGTTGGTTAGCTATTGGTTGAGTGTTCTCTAGTCAAAAATAATTT
AAACCTTAAAAATCTGTAGATTTAGCGATTTTAAATTTGAAATCAGGGTTGAGGAATATT
TTACAATTGATCCTGATTATTCGGAATCAAATTGCTTTCACAATTTTAGCTTTAAATAAA
AAATAAAATTTAAACAAAAATATTTTATTAAAATTTTCCAGCTAATGATCGAAAAACGTA
ATTATTAACAAAAGCCCAAAATGGCATTGAAATTGAATTTTCAAGCTTGCAAGGAAATGA
AATGATTGATGAAAATGGTGAAAAGTTGAAACGATCGCTAAAGACAATTACAGCTTCATT
TCGTCTCATAATTGTGATGATGAAAAGTATAAATCCAAGAAGGAATTTAATTCCATAATT
AAGTCCATATTTTATGAAATAAACTTGATTCTGACGGTCATTTGTTTTTGATACTATTTC
TGCTTCAATTTTGTTTATTTTTCTTTCAAGTTTGACATATTCGATGTAATTATCCTTCAT
TGAAGTCTGTTGAAGTTGCAATTTTAGATTTTTAAATTCATTTTTTAAGGTCTTGACTTG
TTCTGTATCACCAAGGAAGAAACTTACCGGTGCTAAAATTTGTTTCAAAAAAGCAATTAG
AAATGTCAAAATGCTGACAATAAATATCAAATGCAT

>g15778.t4 Gene=g15778 Length=189
MQNFSDNSEYDSSYSLRHLKEQVTVHQFNQLIYCSLVGIQIVIRGYYMEFNNYFKEFLPQ
AFHRFIFESSKYVSAQKCRILTLPADATIPSHNNICRIDFIDDHQIYIKCNVDIPSKPPA
LMTKILNAVDEKLFSNHTMYKFVQALVEEWKNKIICLSHQHDHDVSKLKKVLGIQQNDEL
LVSYWLSVL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g15778.t4 Gene3D G3DSA:3.40.50.12430 - 11 126 0
2 g15778.t4 PANTHER PTHR31441 FOLLICULIN FAMILY MEMBER 13 188 0
1 g15778.t4 Pfam PF16692 Folliculin C-terminal domain 15 93 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005085 guanyl-nucleotide exchange factor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed