General information for g15787.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase 11.
Parent gene
- The parent gene g15787 is located on chr_4: 6777516..6778281 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15787 | g15787.t1 | TTS | g15787.t1 | 6777478 | 6777478 |
| chr_4 | g15787 | g15787.t1 | isoform | g15787.t1 | 6777516 | 6778245 |
| chr_4 | g15787 | g15787.t1 | exon | g15787.t1.exon1 | 6777516 | 6777638 |
| chr_4 | g15787 | g15787.t1 | cds | g15787.t1.CDS1 | 6777516 | 6777638 |
| chr_4 | g15787 | g15787.t1 | exon | g15787.t1.exon2 | 6777691 | 6777941 |
| chr_4 | g15787 | g15787.t1 | cds | g15787.t1.CDS2 | 6777691 | 6777941 |
| chr_4 | g15787 | g15787.t1 | exon | g15787.t1.exon3 | 6777998 | 6778093 |
| chr_4 | g15787 | g15787.t1 | cds | g15787.t1.CDS3 | 6777998 | 6778093 |
| chr_4 | g15787 | g15787.t1 | exon | g15787.t1.exon4 | 6778161 | 6778245 |
| chr_4 | g15787 | g15787.t1 | cds | g15787.t1.CDS4 | 6778161 | 6778245 |
| chr_4 | g15787 | g15787.t1 | TSS | g15787.t1 | 6778968 | 6778968 |
Sequences
>g15787.t1 Gene=g15787 Length=555
ATGCCAACTTGGAATCAAATTCAAGCACAACTTCAAAGTCCTAATAATCCAGTTGTATTT
CTTGATATAAGTATTGGAAATACTGAAATTGGAAGAATAATTATTGAGTTATTTGCACAT
ATAGTGCCGAAAACGGCTGAAAATTTTAGACAATTTTGTACTGGTGAATACAAACCACAT
GGAGTTCCAATTGGTTACAAAGGAGCATCATTTCATCGAGTAATAAAAGATTTCATGATT
CAAGCAGGAGATTTCGTCCATAACGATGGAACTGGTGTAATGAGCATTTATGACAGTCCA
ACGTTTCCTGATGAAAATTTCAATCTTAAACATGATAATGCAGGATTGTTGTCAATGGCA
AATAGCGGTAAAGACACAAATGGTTGTCAATTTTTTATCACTTGTGCCAAATGCAGCTTT
TTGGATAATAAGCATGTTGTATTTGGTCGAGTTCTTGATGGAATGTTATTAGTAAGAAAA
ATTGAAAACGTTCCAACTGCAGCATCAAACAAACCTCGCATACCTGTAGTAATTACGCAA
TGTGGTCAAATGTAA
>g15787.t1 Gene=g15787 Length=184
MPTWNQIQAQLQSPNNPVVFLDISIGNTEIGRIIIELFAHIVPKTAENFRQFCTGEYKPH
GVPIGYKGASFHRVIKDFMIQAGDFVHNDGTGVMSIYDSPTFPDENFNLKHDNAGLLSMA
NSGKDTNGCQFFITCAKCSFLDNKHVVFGRVLDGMLLVRKIENVPTAASNKPRIPVVITQ
CGQM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g15787.t1 | CDD | cd01926 | cyclophilin_ABH_like | 17 | 182 | 3.28965E-106 |
| 10 | g15787.t1 | Gene3D | G3DSA:2.40.100.10 | - | 8 | 184 | 3.3E-80 |
| 2 | g15787.t1 | PANTHER | PTHR11071:SF443 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H | 12 | 184 | 6.6E-83 |
| 3 | g15787.t1 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 12 | 184 | 6.6E-83 |
| 11 | g15787.t1 | PIRSF | PIRSF001467 | Peptidylpro_ismrse | 5 | 184 | 2.0E-72 |
| 8 | g15787.t1 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 37 | 52 | 3.8E-32 |
| 5 | g15787.t1 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 71 | 83 | 3.8E-32 |
| 7 | g15787.t1 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 115 | 130 | 3.8E-32 |
| 6 | g15787.t1 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 130 | 142 | 3.8E-32 |
| 4 | g15787.t1 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 143 | 158 | 3.8E-32 |
| 1 | g15787.t1 | Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 23 | 182 | 2.2E-48 |
| 13 | g15787.t1 | ProSitePatterns | PS00170 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 66 | 83 | - |
| 14 | g15787.t1 | ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 20 | 183 | 40.138 |
| 9 | g15787.t1 | SUPERFAMILY | SSF50891 | Cyclophilin-like | 10 | 184 | 9.5E-68 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006457 | protein folding | BP |
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
| GO:0000413 | protein peptidyl-prolyl isomerization | BP |
KEGG
Orthology
- This transcript has been annotated with K09567 (peptidyl-prolyl isomerase H (cyclophilin H))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
