Gene loci information

Transcript annotation

  • This transcript has been annotated as Peptidyl-prolyl cis-trans isomerase H.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15787 g15787.t19 TTS g15787.t19 6777478 6777478
chr_4 g15787 g15787.t19 isoform g15787.t19 6777516 6778245
chr_4 g15787 g15787.t19 exon g15787.t19.exon1 6777516 6777941
chr_4 g15787 g15787.t19 cds g15787.t19.CDS1 6777613 6777941
chr_4 g15787 g15787.t19 exon g15787.t19.exon2 6777998 6778093
chr_4 g15787 g15787.t19 cds g15787.t19.CDS2 6777998 6778093
chr_4 g15787 g15787.t19 exon g15787.t19.exon3 6778161 6778245
chr_4 g15787 g15787.t19 cds g15787.t19.CDS3 6778161 6778245
chr_4 g15787 g15787.t19 TSS g15787.t19 6778968 6778968

Sequences

>g15787.t19 Gene=g15787 Length=607
ATGCCAACTTGGAATCAAATTCAAGCACAACTTCAAAGTCCTAATAATCCAGTTGTATTT
CTTGATATAAGTATTGGAAATACTGAAATTGGAAGAATAATTATTGAGTTATTTGCACAT
ATAGTGCCGAAAACGGCTGAAAATTTTAGACAATTTTGTACTGGTGAATACAAACCACAT
GGAGTTCCAATTGGTTACAAAGGAGCATCATTTCATCGAGTAATAAAAGATTTCATGATT
CAAGCAGGAGATTTCGTCCATAACGATGGAACTGGTGTAATGAGCATTTATGACAGTCCA
ACGTTTCCTGATGAAAATTTCAATCTTAAACATGATAATGCAGGATTGTTGTCAATGGCA
AATAGCGGTAAAGACACAAATGGTTGTCAATTTTTTATCACTTGTGCCAAATGCAGCTTT
TTGGATAATAAGGTAAAGTTTGTAAATGAAAAGTTAAACATGTTCATTAATTTATTTTTT
ACAGCATGTTGTATTTGGTCGAGTTCTTGATGGAATGTTATTAGTAAGAAAAATTGAAAA
CGTTCCAACTGCAGCATCAAACAAACCTCGCATACCTGTAGTAATTACGCAATGTGGTCA
AATGTAA

>g15787.t19 Gene=g15787 Length=169
MPTWNQIQAQLQSPNNPVVFLDISIGNTEIGRIIIELFAHIVPKTAENFRQFCTGEYKPH
GVPIGYKGASFHRVIKDFMIQAGDFVHNDGTGVMSIYDSPTFPDENFNLKHDNAGLLSMA
NSGKDTNGCQFFITCAKCSFLDNKVKFVNEKLNMFINLFFTACCIWSSS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g15787.t19 Gene3D G3DSA:2.40.100.10 - 3 148 2.3E-62
2 g15787.t19 PANTHER PTHR11071:SF443 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 12 145 7.4E-62
3 g15787.t19 PANTHER PTHR11071 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 145 7.4E-62
7 g15787.t19 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 1.8E-24
4 g15787.t19 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 71 83 1.8E-24
6 g15787.t19 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 1.8E-24
5 g15787.t19 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 1.8E-24
1 g15787.t19 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 23 145 5.6E-34
9 g15787.t19 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 66 83 -
11 g15787.t19 ProSiteProfiles PS50072 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 20 155 30.052
8 g15787.t19 SUPERFAMILY SSF50891 Cyclophilin-like 10 145 8.77E-51

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006457 protein folding BP
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0000413 protein peptidyl-prolyl isomerization BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed