General information for g15787.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peptidyl-prolyl cis-trans isomerase 11.
Parent gene
- The parent gene g15787 is located on chr_4: 6777516..6778281 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15787 | g15787.t20 | TTS | g15787.t20 | 6777478 | 6777478 |
| chr_4 | g15787 | g15787.t20 | isoform | g15787.t20 | 6777516 | 6778245 |
| chr_4 | g15787 | g15787.t20 | exon | g15787.t20.exon1 | 6777516 | 6777638 |
| chr_4 | g15787 | g15787.t20 | cds | g15787.t20.CDS1 | 6777516 | 6777638 |
| chr_4 | g15787 | g15787.t20 | exon | g15787.t20.exon2 | 6777691 | 6777941 |
| chr_4 | g15787 | g15787.t20 | cds | g15787.t20.CDS2 | 6777691 | 6777888 |
| chr_4 | g15787 | g15787.t20 | exon | g15787.t20.exon3 | 6777998 | 6778245 |
| chr_4 | g15787 | g15787.t20 | TSS | g15787.t20 | 6778968 | 6778968 |
Sequences
>g15787.t20 Gene=g15787 Length=622
ATGCCAACTTGGAATCAAATTCAAGCACAACTTCAAAGTCCTAATAATCCAGTTGTATTT
CTTGATATAAGTATTGGAAATACTGGTAAGATTTATTAAAAAAATGTTTAAAATTGTTTT
GTTGACATTTTTCCCGGTTTAATTTTATACAGAAATTGGAAGAATAATTATTGAGTTATT
TGCACATATAGTGCCGAAAACGGCTGAAAATTTTAGACAATTTTGTACTGGTGAATACAA
ACCACATGGAGTTCCAATTGGTTACAAAGGAGCATCATTTCATCGAGTAATAAAAGATTT
CATGATTCAAGCAGGAGATTTCGTCCATAACGATGGAACTGGTGTAATGAGCATTTATGA
CAGTCCAACGTTTCCTGATGAAAATTTCAATCTTAAACATGATAATGCAGGATTGTTGTC
AATGGCAAATAGCGGTAAAGACACAAATGGTTGTCAATTTTTTATCACTTGTGCCAAATG
CAGCTTTTTGGATAATAAGCATGTTGTATTTGGTCGAGTTCTTGATGGAATGTTATTAGT
AAGAAAAATTGAAAACGTTCCAACTGCAGCATCAAACAAACCTCGCATACCTGTAGTAAT
TACGCAATGTGGTCAAATGTAA
>g15787.t20 Gene=g15787 Length=106
MIQAGDFVHNDGTGVMSIYDSPTFPDENFNLKHDNAGLLSMANSGKDTNGCQFFITCAKC
SFLDNKHVVFGRVLDGMLLVRKIENVPTAASNKPRIPVVITQCGQM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g15787.t20 | Gene3D | G3DSA:2.40.100.10 | - | 1 | 106 | 0.000 |
| 2 | g15787.t20 | PANTHER | PTHR11071:SF443 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H | 1 | 106 | 0.000 |
| 3 | g15787.t20 | PANTHER | PTHR11071 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 106 | 0.000 |
| 6 | g15787.t20 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 37 | 52 | 0.000 |
| 5 | g15787.t20 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 52 | 64 | 0.000 |
| 4 | g15787.t20 | PRINTS | PR00153 | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 65 | 80 | 0.000 |
| 1 | g15787.t20 | Pfam | PF00160 | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 1 | 104 | 0.000 |
| 9 | g15787.t20 | ProSiteProfiles | PS50072 | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 105 | 25.216 |
| 7 | g15787.t20 | SUPERFAMILY | SSF50891 | Cyclophilin-like | 1 | 106 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
| GO:0000413 | protein peptidyl-prolyl isomerization | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
