General information for g15832.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Nucleotide exchange factor Sil1.
Parent gene
- The parent gene g15832 is located on chr_4: 6963760..6969280 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15832 | g15832.t2 | TSS | g15832.t2 | 6962714 | 6962714 |
| chr_4 | g15832 | g15832.t2 | isoform | g15832.t2 | 6962775 | 6964388 |
| chr_4 | g15832 | g15832.t2 | exon | g15832.t2.exon1 | 6962775 | 6962991 |
| chr_4 | g15832 | g15832.t2 | exon | g15832.t2.exon2 | 6963220 | 6964388 |
| chr_4 | g15832 | g15832.t2 | cds | g15832.t2.CDS1 | 6963333 | 6964388 |
| chr_4 | g15832 | g15832.t2 | TTS | g15832.t2 | 6964466 | 6964466 |
Sequences
>g15832.t2 Gene=g15832 Length=1386
ATGATGAAATTAAAAATCTTAGTCATTATTTTAGTAATTCAAATTACATTTAAAGTAGCA
AAAAGTGTAGATTTATCAATAGGAACAAAAGAAGGAGAAGAAAACTCAACTTTTATAGCT
ACTGAGGAATGGCAGGAAATTAAACCAGGTAAAAATTTGAAAAAGTCATTTAAAATATTT
GAAATAAAATTCAGACAGTTTTGCAAATGCTGAAAATGCCAAAAAGTTCCACAAGGACTT
CACTATCGTCTGAATCTTCAAACAGGTAAAAAAGAAGCAAAACTACTTGATCCAGAAGAA
AATGAACCTCAATCACAATCATCATTTCAAATGGTTCCACAAACAAATGAAAAACAAGAA
GAAGAGGAAGCTTCAATTGAAAGTGCTAAAAAACGACTTGAAGAAGCATTAAAAAATATT
CCAGCAGAAACTTTCGATCAAGAAACTGAAGAAAAATGGAAAGAAATAAAAAATAAATTT
AAATCATATGAAGAAATTAAGCAAGATTTAAAAGATCTCGATTTAGCACCAAAAACTGAA
GCTGAAGTTTTGACTCAACTTATGGAAGAATTTGAAAGCAAACCAGAAAATAGTTTGGAC
ATTTTAAAAGATATGGAATTTATTTTGCATTCAATTGACAATGCTTTGCTTTTTATATCA
AAAAATGGAATAGAAAAAATTGTCATTCCTCACCTAATCAATCAAACTGACGTGGCTCAA
CGAGTAATTCTTCTAAAAATTGTTGGTGCAATTTCACAAAATAATTTACAAGCTAAAAAT
TATTTATCAGAAAAAACAAATTTAGTCAATGAATTAATATTTCTTCTTGAAAAACATGAA
ACACAAGAAGAACTTTCAGCTGGACTTTTTAGTGTTGGAAGTTTAATGAGAAATAATAAA
ATTTTAGGTTTAAACAATTTAAAAAAAGTTCTTGAAGTTCTTTTGAGGTTTCTTGAAAAA
GAATCACTTGGGACAAGTTTAAAAGTTAAATCATTGCTGTTGATTGAAGATTTAATTTTA
AGCTCAAAAGATGAACTTAATTCATTCATAGAAAGCAACAAAATTTGCCAACAACTTTCA
AATTTCTTTAAACTTAATAAAAATTCTTTCCTAGTTGACACCGATTCAGCTGAAAGATCA
GCAGGATCATTTACAGTTTTAAATGGAAAATGTAAACACATATGGAGTGAAGATCCAAAT
TTGAGACATGCATTACTTGTTGTAATGAATAATTATATGATGAAATTAAGAGAAGAAAGT
GATGATGATTTGAGATTTTTTTATGGACTTGTAGCTGAAAATTTTGAAAGTTTAAATGAA
ATGCTTTATGGAGATTTAAAAATTAGTAGTGATGATTTAAGTCAAAAATATAATGATGAA
TTGTAG
>g15832.t2 Gene=g15832 Length=351
MVPQTNEKQEEEEASIESAKKRLEEALKNIPAETFDQETEEKWKEIKNKFKSYEEIKQDL
KDLDLAPKTEAEVLTQLMEEFESKPENSLDILKDMEFILHSIDNALLFISKNGIEKIVIP
HLINQTDVAQRVILLKIVGAISQNNLQAKNYLSEKTNLVNELIFLLEKHETQEELSAGLF
SVGSLMRNNKILGLNNLKKVLEVLLRFLEKESLGTSLKVKSLLLIEDLILSSKDELNSFI
ESNKICQQLSNFFKLNKNSFLVDTDSAERSAGSFTVLNGKCKHIWSEDPNLRHALLVVMN
NYMMKLREESDDDLRFFYGLVAENFESLNEMLYGDLKISSDDLSQKYNDEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15832.t2 | Coils | Coil | Coil | 6 | 29 | - |
| 5 | g15832.t2 | Gene3D | G3DSA:1.25.10.10 | - | 50 | 330 | 6.5E-16 |
| 4 | g15832.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 1 | g15832.t2 | PANTHER | PTHR19316 | PROTEIN FOLDING REGULATOR | 11 | 310 | 6.9E-25 |
| 2 | g15832.t2 | PANTHER | PTHR19316:SF32 | NUCLEOTIDE EXCHANGE FACTOR SIL1 | 11 | 310 | 6.9E-25 |
| 3 | g15832.t2 | SUPERFAMILY | SSF48371 | ARM repeat | 61 | 256 | 1.9E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
