General information for g15904.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein unc-13 homolog B.
Parent gene
- The parent gene g15904 is located on chr_4: 7254060..7286298 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15904 | g15904.t1 | isoform | g15904.t1 | 7254060 | 7286298 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon1 | 7254060 | 7254224 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS1 | 7254060 | 7254224 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon2 | 7254287 | 7254419 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS2 | 7254287 | 7254419 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon3 | 7254684 | 7254849 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS3 | 7254684 | 7254849 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon4 | 7254909 | 7255007 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS4 | 7254909 | 7255007 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon5 | 7255944 | 7256042 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS5 | 7255944 | 7256042 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon6 | 7256237 | 7256486 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS6 | 7256237 | 7256486 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon7 | 7256544 | 7256678 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS7 | 7256544 | 7256678 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon8 | 7256734 | 7256998 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS8 | 7256734 | 7256998 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon9 | 7257540 | 7257706 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS9 | 7257540 | 7257706 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon10 | 7257774 | 7257995 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS10 | 7257774 | 7257995 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon11 | 7258104 | 7258550 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS11 | 7258104 | 7258550 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon12 | 7258609 | 7258893 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS12 | 7258609 | 7258893 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon13 | 7259127 | 7259724 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS13 | 7259127 | 7259724 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon14 | 7259929 | 7260070 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS14 | 7259929 | 7260070 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon15 | 7271790 | 7271896 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS15 | 7271790 | 7271896 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon16 | 7272656 | 7272788 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS16 | 7272656 | 7272788 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon17 | 7274436 | 7274537 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS17 | 7274436 | 7274537 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon18 | 7274660 | 7274777 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS18 | 7274660 | 7274777 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon19 | 7274839 | 7274913 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS19 | 7274839 | 7274913 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon20 | 7275907 | 7275915 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS20 | 7275907 | 7275915 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon21 | 7277144 | 7277260 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS21 | 7277144 | 7277260 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon22 | 7280882 | 7283610 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS22 | 7280882 | 7283610 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon23 | 7283676 | 7284686 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS23 | 7283676 | 7284686 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon24 | 7284917 | 7285787 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS24 | 7284917 | 7285787 |
| chr_4 | g15904 | g15904.t1 | exon | g15904.t1.exon25 | 7285855 | 7286298 |
| chr_4 | g15904 | g15904.t1 | cds | g15904.t1.CDS25 | 7285855 | 7286298 |
| chr_4 | g15904 | g15904.t1 | TSS | g15904.t1 | NA | NA |
| chr_4 | g15904 | g15904.t1 | TTS | g15904.t1 | NA | NA |
Sequences
>g15904.t1 Gene=g15904 Length=8889
ATGGATCAATCACACTTATCAGATCATTCGTCAGCGCAATCGTCGCCCGTACATTTACAA
AAGATGCAATTTAAACTCCAACAGCGATTAGCAGAGCAGCAGCAGCAACAGCAGGTCACA
CAAATGTCACCAATGATGGATCGACGTAAAATCGGCGCCAAAGCTGCTTCTGCTCTTGAT
TTATCTAACGGGCAGCCGCCAATGGATGCTGCAATGCTTTCTCACCTTCAACATCAACAA
AATATTCAGCAATTACCACCAAATCCACAACATTCATTAATGCTGCATCAACAGCAAAAA
TTTCCACATCAAAATCATCCCATTGAACAGCAAATGTACCAACAATTTCATCAGAAACCA
ATGCTTAATCAATTAATGAAAGTTCAGGGAAATAATGCTTCATTGGCTGATTTTAGATCG
ATTGTTCATGGAAGTACTGCTCAGCTTGGTGAAATGTTAGCCAGTAAAGAGCAAATAAAT
GCAATAGTAAACGCACAAAAGCATTCTGATTATATTGTTGAAGATTACATGGACAAAATA
CAAACAAGAATTGCATTATTAGAGACAGAATTGAAATTTGCTGATCGAAAACTTCACGTA
CTTTATACAGAATACAATGAAATGTTGGCAAAAATTGATAAATTAGAAAATTTGACAATT
GCACAGCAGCAAGTTTTGGGAAATTTACTTGATTTATGTAGTAATCAGACACATGAAGTT
CATGCAGCAAAAGCAGTACAAGCTAAAGCTGCACAATTATTTGGCATTGATCCACAAGCA
TTGCTTGCAATGAGCAATTCTGAGGCATTTGTTGAGCAGCCATTTCAAAGTGAAGCACTT
GACACAACAGCAGCAGAATTCAGTGAATTACTTGAAGATCTTAAAAATGAAGCGATAATT
GATGGCTTAAGAGGACAACCACAGCAACTTCAACAATTGCAGCAATTACAGCAAGCACAA
GCATTTGCCAATGACTATCAAGGCGATGCTGATTATGAAGCTCTTATTGATATGATAAAC
AAACAAATGAAATTTCAACAACAGCCACAAGCTACTGATTTCACTTTTTTTAATCGTGGC
GAACAAGCTGAAGAGTTTTTAAAAGCTCAAGAAGCCATGAAGCAGCAAATTCTTCAACAA
CAAAATTCTATGGAATTACTTAAAAATTTATCAGAAAATCAATTGAAAATGGAGATGGAT
TTTTTTCGCAGCGGCGAGATCAACAAAAGCCTTTTTGACACACTCCAAGCAAGTGTTCAG
CCGCAGCCCTCTACATTAGACATGATCTATGAGGACAATGAAGAAAAAGCTGAAGGCAAA
GAACCATCACCAGTAACAGAATCAAAAAGTGAATCTCAAAAAGGACATGAATCATCAACC
GAAGAAAAATCATCAAGTTCACGTAAACCAAAGTCAAAGAAAAAGAAACATCATCAACAG
CTACAACAACAACAATTTCAACTTCAAAGTGATGATCAATTAATTCATGAAATAATTGAA
GAAATTTTGAAATTAGAAAATTTGACAAATTTACTCAATAAAAATCAGCATGATGAATTA
AAAACATTGATAAAAAATGACATCAAATCTTTTCATAATTTAAAAAAATTAGACATGAAT
TTTGTTTCACTTTTGGTCAATCCTGTTACAAGAATTTCACCAAGTAGTTCAATGAGTCTT
GAAGAAGAAGATCAAAGATTTGAATCATTGATGAAAAAGCTCAAGAAAAATTTAGAAGTT
TTGAAAAAGATTGAACCAACAGCAAGTGAAGCTACATGTTCAAAATCATCACTTTATAAT
GATGATGAATATTTGCAGTCACTAAGAAAATCACTTGATCGTCATAATTCAATGCAATTG
CTGTTACAATTACAAAATCCAAATTTAAATTCAACCAACAAATCTGTACTTGCTTCAAGT
GATTTTTTATCGGATGATCAGCTGGATGGCGGTGAAAGTCCACCACCTCCAGCGCCTAAT
GGTGATCTCTACTATCCAAATGATGAAACTTATAATGTCGAACAAGAATGGAATCCTTTT
CATGTTGATATTATGATGATGAAACAAAATCAACAAAGTCAACCACGACAACTTTCACCA
TATCGAAGAAATACATCACCAAAGAAAAGTGATTCTGGTTTAAGCTCAATGTCAGGCTTT
TCAAGTTTTGAGAAATCACCAAATTCACCATCATATTCACTGCCATATGATCATTCTAAC
AACTATAGAAGCAACATTCGATCACAAGATTATGTGAAAATGTTAAACACTTATCAACAA
ATGAAAGTTTCAGCTGCTTCACAAGATATTCAAAATAGTGGAAAAACATTTCCAGTAGAA
CAACCAACATCAATGTCGCCCTTTCTATTCTCAGATGTCCCAAACAACACCAATAGTAGC
AATGTATCGACAAATTCTCAATTAGCTCCGCCCGAGGGCATCTATGGCGAAGAGAACTTA
AATTATATAAAAGAACTTTCACAAAATGTTCCAATCTGCTCAATTTATGAAAACAAATCA
ATTTTTGACAATGTTTCTGTCATTAAACCACCATCAGCATGGGAAGTTTACATGAAAAAT
CAAAATGAAAGTCAACAATCAGTGCCCTATCCAGATCTTATAAATGTTAATCAGGAACAA
AATACTGAAGCTCTGAAAAATTTACAACAGCAGCAGCAACTTGAAGAATTAATGGAACAA
AGAAGAAAACTTGATTTACAAAAGCAACAATTGAAACAAGAACAGCAATTGTTGTTACAG
AAAAAAGTTCAAAAAAGATCACAAAATTTGACTGATCATTTAGTTTATTATCCATCACAA
CCGTCAAATGAATATCAACGTGATTACCATCCACAACATCATCAAAATCTACAACATGAT
GAATTTATGCAGCATGCGCATGCACAACATCAAGTTCATCTTCAAAGACAAATGAGAACT
GTTGAAGATCCAAGAATTGGACAACCTGAAAGAAATGATAAGAAAAAACATGCTGTACTT
AATAAAGTTCAAAATTGGCTACCAGAAATTAAACTTAAAAAAGGCTCAAAAAGACATCGA
AGTCATAGTTTGCCTGAAGTTGATGCTGATGAAGCTTATGATCCAAGAACTTACAAAATG
AATCTTAAAAAAGGCCAACAAGGTCAAGCAGGAACTTCTAATGGTAAAAAGGGTGAAATT
TATGTCATGAAATCTTATATGAAAGGAAAAAAGAAAGATTTAGTTCGAACAATGTCATCA
ATTATGCATAAAGCTCAAAAAAGTTATCGTCGTCATAGTTTTTCACATCATCAATTATCA
GATGAAGAAGCACCAGCGACTGATCCATCACCAAAATTTCAACATGTTCGTACAACACGA
AGCATGTCAGCAGCACCAAGTAAACTTCGTTCTTATTCTGACACTGAAACAGACATAAGT
TCTATGTTTAGTGATAGTGAAGAACATGGTGCACCACCAGTTTTTGCAACAATTGGCGAC
TCGAAGTCAAAACATTCTGATGCTGGTGACTCAGATCGTAATGCGGTTAGTGACTCATCA
AATGGAAGTAAACGACAACAAGAACAGCAGCAGTCACAAGAGCAACCGTCAGAAGGAAAT
TTCAATCTGAATTTCACCAGCACCAGTATGGAATTTGCAGCGAGTCGCAAAGTTGGAATG
TTGAGAAAAAAGTCAGCAAATGATGATGTTGGTGAAAGTGGAAGTCCAACAGGCAACGAA
AATACAGAAATGATTTTTGAAAAAACCAAAAATCCACAGAAATTGATGAAAACTCATTCA
ATATTTGTTGATTCAGTTGATGATGAAAATGACAAATTTAAACCAATTGCAGCACCAAGG
CATGAAAGTTTAGAATCTAAAGACAGTATCAAACCAATTCCAAGTCCAAGGTTTGAACAT
TCGAGATCAAATAGTATCAAAACAAGTCTTGATGTGCCAGGCAAAGAAGAAGAAGATTCA
AAATCACAACATTCATTTAGAACATCAATTTCAAGTCGTAGACAAAGTACAGAAGATTCA
ATTGACACTGATGATGAATATTTTTATTATGAAATGAGAAATTTAGAAGAACTTGAAAGA
AATAGTCATATGGAATCACTTTTACAAGATGATAAAAGCACATTGATAAATAACATCATG
CAATTAGAAACATCAACTGTTGAACCTGATGAAAATGTTAAAATGAACATGAGTCGTGTT
TTAAATGAACTCAAAATAAAAGTCAAACAACGTGAACCAATTGATGAAATTCGACAAGAT
AAAATTAATAACAACAACAATAATAAAAATATTTACGATAAATTTTCATTGGTTTCAACT
AATATCGCAGATTTGCCATGGAATCGTGAGTCAGACGATGATGGTGAATTTATGGATCAG
TTGAATCAATTTGAAAGTGAAATTCGTGATACAAGTTATGGAAAAGTTAAGAAGAAACGT
AAAAAATCTAAACGTGGTGGACGTTATGAAAAATCATCATCATCGGTATCATCTGATGAT
GAAAAAGCTGTATCAATGAGACAAGAACTTGATGACTTTCATTTGAATGTGGATAAATAT
GAACGACCACATTCACAATCATCAGGTGTAACTTCAGGTCCCGATTCGCCCATTGCAAGT
GATGATGAAATTGCAAGTGATGCAGTTGAAAGTGGTGAAGGTCAACAGCAACAAGTTGAA
CATTATGATGATTTTAAACAGCGTCAAAAAAATGAGCGGCTCCTCGAGCATTCACAGCAG
CCGCTTCAACACCAGAATGATGATCGAGGAGCGAACAATGAAGGATCAGTTCAAGTCGGT
AGTGCTGCTGCCGCGAGTGAACTAAAACATGAAGAAATAAGTGAGAAAAAAGCATCGCCA
TTAAGAAAATTGATGCAATTGTCATCAACAATGTCAACTGATTCGACAAATCAAGATAGT
GGTATAAGTGATACAAGTGGTGGTGCAGGTGGAATGAATAGTAAATGGAAATTATTAAAA
ACATTAAAAGAAAGAAAAGAAATGAATAATCAAGTGAAAATAAAAGAAGAAGAAGAAGGT
GTTAAAGAAAAGCCGGGCGGTGGAGATGGAGTGCGCGGCAATCATTCAAATGACAATCCG
TTCTATAGCAACATTGACAGCATGCCTGACATTCGACCGCGTAGAAAATCAATTCCGCTC
GTGTCAGAACTTGTGCTCAAGACAATGGCAGCTACAAAGCGAAATGCTGGATTAACATCT
GCAATACCACGACCAATGTTAAATGATGAGGATTTGAAAACACATGTGTACAAAAAATCT
TTACAAGCGCTCATATATCCAATCTCGTCAACCACACCGCATAATTTTACGCCTTATAAT
GCCACATCGCCGACTTATTGCTACGAATGTGAAGGTTTGCTTTGGGGAATTGCTCGACAA
GGTGTCCGTTGTACAGAATGTGGAGTGAAATGTCACGAAAAATGCAAAGACCTTCTCAAC
GCGGATTGCCTGCAAATGTGCTTTGCAGGGGCTGCTGAGAAGAGCTCGAAACATGGCGCC
GAGGACAAGGCGCAATCTGTCATGACAGCTATGCAGGAACGCATGAAACAACGTGTCTGT
GACAAACCGGAAATATTTGAATTGCTTAGAGCGATATTTTGCTGTGATGAGAAAAGTCAT
GCCGGTCACATGAAGGCCGTTACGCAAAGTGTACTTGACGGGACCAGCAAATGGTCTGCA
AAAATTGCCATTACAGTAATATGTGCACAAGGGCTGATAGCAAAAGACAAAAGTGGTACG
AGCGATCCCTATGTGACGGTACAAGTTGGAAAAGTCAAAAAACGCACACGAACAATGCCA
CAGGAATTGAATCCAGTGTGGAATGAAAAATTTCATTTTGAATGTCACAACTCCTCAGAT
CGTATTAAAGTTCGTGTATGGGACGAGGATAATGATTTAAAATCTAAACTTCGGCAAAAG
CTGACACGTGAGTCCGATGACTTTCTTGGTCAAACAATCATCGAAGTGCGCACACTATCA
GGTGAAATGGACGTATGGTACAATCTTGAAAAACGCACAGACAAATCGGCAGTGTCAGGC
GCTATTCGGCTGCACATTTCAGTGGAAATCAAGGGCGAGGAAAAAGTTGCGCCCTATCAC
GTACAATACACATGCTTGCATGAAAACATTTTTCACTATCTGTGTGAGCAGAACAGCGGA
CTGGTGAAGCTGCCACAAGCTAAAGGCGATGATGCGTGGAAAATTTATTTTGATGAAACG
CCACAGGAAATTGTAGATGAGTTTGCAATGCGTTACGGCATAGAACCAATATATCAGGCC
ATGACTCACTTTCATTGTCTTTCGACCAAATATTTATGTCCTGGTGTACCATATGCTATG
AGTTTTCTATTGGCCAATATCAATGCTCATTATGCTCACACAACTGCCTCTAGTGCTGTT
TCAGCAAGTGATCGATTTGCTGCTAGTAATTTTGGTAAAGAGAAATTCGTAAAGCTTCTG
GACCAACTGCACAATTCATTGCGTATTGATTTATCGTCATATCGCACAGTCTTCCCTGCT
TCATATCCTGAGAAACTCGAAGATCTCAAATGTGTCGTCGATTTGCTCACAAGTATCACT
TTTTTTCGTATGAAAGTTCAAGAACTTTCGTGTCCACCACGCGCAAGCACGGTTGTTAAA
GACTGTGTCAAAGCATGCCTTAGATCCACTTATCAATTTGTATTTCAACATTGTTATGAA
ATTTACAGTAAAGAATTTCAGGTGGATCCAAATGAAAAAGTCGATCCAGAAGACCAGGGA
CCACGACTTGATTCACTCGATTTCTGGCATCGTCTTATTGCATGTCTTGTGTCAGTAATT
GAAGAAGACCGAAATGTTTATAGTCCAAAAATGAATCAATTTCCGCATGAATTGAATGTC
GGTCAACTTTCAGCTTCGACAATATTTTCATTGTTGGCAGTCGATATTAAATATGCCTTG
GAAGAACACGAACAGCATCGATTATGTGAATCATCAGCTTACATGAATCTCAATTTTGCT
GTGAAACGTTTTTATGTAAAGCACATTAAAGAAGTGCCGCCATATAAAGGTTCAGTGCCA
GAATATCCAGCATGGTTTGAGCCATTTGTGATGCAATGGTTGAATGAAAATGATGATGTA
TCATTAGAATATCTTAAGGGTGCCTATGCGAGAGATAAAAAAGATGGGTTCCAACGAAGC
AGCGAGCATTCGCTGTTCTCAAACTCAGTGGTCGACGTGTTCACGCAGCTCTCGCAGTGC
TTCGATGTCGTTAGCAAGCTCGAGTGTCCCGATCCAGAAATTTGGAAGCGGTACATGAGG
CGCTTTGCCAAGACAGTCGTTAAGGTTCTACTCTCGTATGTCGAGATAGTCAAACTTGAT
TTCCCCGAACAAATGAAGGACGAGAGAATCGCCTGTGTCCTCATGAACAACATTCAGCAA
TTGCGTATTCAACTTGAAAAAATGTTTGAACAAATGGGTGGTGAGAAATTGGAAGAAGAT
GCAGCAAATATTTTAAAAGATTTACAACAACAGTTAAATAGCATACTGGACGAATTGGCA
TTGCAATTTGCAAACAGTCTGAAGCCATGCATTTCTCAAAGCGTACGTGAGTTAGGCGAG
CGCTTGTTCAACATTAAATCTAATGGAGCGCAAGCGAAAGCCGGCTCTACGGAAGCTGAT
GAAGTGCTTCGTCCCTTGATGGACCTTCTCGATGGCTCTCTCACAATGTATGCACAATCC
TGCGAAAAGACGGTCCTGAAACGCTTATTGAAGGAATTATGGAAGATTGTGATCAGAACC
ATCGAGAAAACCATCGTGCTGCCGCCAATCAACGACAAGACTATCATTTTCAAAAATCTC
ACCGACAATGCAAAGAATATTGCAGCAAATGCAAAAATCGAGGACATGGGTAGATTATTT
AAGACGCACATCTCATCAAAACAAGACGTCAAGAGTACTTTAACTTCTGTAATCGAACTT
GAGAAGAACCTTTCATCCTCACAAACGGCTGTCTTGAATGTGTGTCTCGATACAATTAAG
TCGTACTTCCATGCTGGTGGTAATGGACTCAAGAAAAACTATCTCGAAAAATCGCCAGAA
CTGCAGAGTTTGCGATATGCACTGAGTCTCTACACGCAATCGACTGATGATCTTATTACA
ACATTCAACACAACACAAGCAGCAAATATGTCACAGAAAGGTGTACAAAATACACCAGCA
CAAGAAGCATCACGACGAAGATGCCTCGAGCAGGACGAGAATGCTGAAAACACTAATCAG
CCACCACCACCATTGAAATTGAGACTGAATAAGGATCTTAGTCAAGATTCGGGCAATGTT
GATGATGAAGTTGTGGGAGAAGTTTCAGTTCAGGTTGATTTGTTTACTCAAGCTGGATCA
GGTGAACATAAAGTTACTGTCAAAGTCATTGCCGCAAATGATCTCAAATGGGCAAGTCCA
TCAGGTGTCGTATTTCGTCCTTATGTTGAAATTAATCTTACTGGACCACATTTGCAAGAT
AAGAAACGTAAAATGGCAACAAAATCAAAGACCAACAACTGGTCGCCAAAATACAATGAG
ACTTTTCATTTTTCCTTCAACACAGCATCAGAAGAACAATTGGACTTTTATGAACTTCAC
ATTTGTGTACGTGATTATTGCTTTGCTCGTGAAGATCGTCTCGTTGGCGTTGCTTTATTG
CAGCTTAAAGATATCGTTGATCAGCGTTCATGTGCACGTTGGTTGCCATTGTTCAAGAGC
ATCACAAAAGATGAGACTGGTTGGACAATATTGAGAATTTTATGGCAGCGCAGCAATGAT
GAAGTTGCAAAAGAATTCGTAAAACTAAAATCAGAAATTCGACAAGAACCATCAGAAAAA
GACAAATAA
>g15904.t1 Gene=g15904 Length=2962
MDQSHLSDHSSAQSSPVHLQKMQFKLQQRLAEQQQQQQVTQMSPMMDRRKIGAKAASALD
LSNGQPPMDAAMLSHLQHQQNIQQLPPNPQHSLMLHQQQKFPHQNHPIEQQMYQQFHQKP
MLNQLMKVQGNNASLADFRSIVHGSTAQLGEMLASKEQINAIVNAQKHSDYIVEDYMDKI
QTRIALLETELKFADRKLHVLYTEYNEMLAKIDKLENLTIAQQQVLGNLLDLCSNQTHEV
HAAKAVQAKAAQLFGIDPQALLAMSNSEAFVEQPFQSEALDTTAAEFSELLEDLKNEAII
DGLRGQPQQLQQLQQLQQAQAFANDYQGDADYEALIDMINKQMKFQQQPQATDFTFFNRG
EQAEEFLKAQEAMKQQILQQQNSMELLKNLSENQLKMEMDFFRSGEINKSLFDTLQASVQ
PQPSTLDMIYEDNEEKAEGKEPSPVTESKSESQKGHESSTEEKSSSSRKPKSKKKKHHQQ
LQQQQFQLQSDDQLIHEIIEEILKLENLTNLLNKNQHDELKTLIKNDIKSFHNLKKLDMN
FVSLLVNPVTRISPSSSMSLEEEDQRFESLMKKLKKNLEVLKKIEPTASEATCSKSSLYN
DDEYLQSLRKSLDRHNSMQLLLQLQNPNLNSTNKSVLASSDFLSDDQLDGGESPPPPAPN
GDLYYPNDETYNVEQEWNPFHVDIMMMKQNQQSQPRQLSPYRRNTSPKKSDSGLSSMSGF
SSFEKSPNSPSYSLPYDHSNNYRSNIRSQDYVKMLNTYQQMKVSAASQDIQNSGKTFPVE
QPTSMSPFLFSDVPNNTNSSNVSTNSQLAPPEGIYGEENLNYIKELSQNVPICSIYENKS
IFDNVSVIKPPSAWEVYMKNQNESQQSVPYPDLINVNQEQNTEALKNLQQQQQLEELMEQ
RRKLDLQKQQLKQEQQLLLQKKVQKRSQNLTDHLVYYPSQPSNEYQRDYHPQHHQNLQHD
EFMQHAHAQHQVHLQRQMRTVEDPRIGQPERNDKKKHAVLNKVQNWLPEIKLKKGSKRHR
SHSLPEVDADEAYDPRTYKMNLKKGQQGQAGTSNGKKGEIYVMKSYMKGKKKDLVRTMSS
IMHKAQKSYRRHSFSHHQLSDEEAPATDPSPKFQHVRTTRSMSAAPSKLRSYSDTETDIS
SMFSDSEEHGAPPVFATIGDSKSKHSDAGDSDRNAVSDSSNGSKRQQEQQQSQEQPSEGN
FNLNFTSTSMEFAASRKVGMLRKKSANDDVGESGSPTGNENTEMIFEKTKNPQKLMKTHS
IFVDSVDDENDKFKPIAAPRHESLESKDSIKPIPSPRFEHSRSNSIKTSLDVPGKEEEDS
KSQHSFRTSISSRRQSTEDSIDTDDEYFYYEMRNLEELERNSHMESLLQDDKSTLINNIM
QLETSTVEPDENVKMNMSRVLNELKIKVKQREPIDEIRQDKINNNNNNKNIYDKFSLVST
NIADLPWNRESDDDGEFMDQLNQFESEIRDTSYGKVKKKRKKSKRGGRYEKSSSSVSSDD
EKAVSMRQELDDFHLNVDKYERPHSQSSGVTSGPDSPIASDDEIASDAVESGEGQQQQVE
HYDDFKQRQKNERLLEHSQQPLQHQNDDRGANNEGSVQVGSAAAASELKHEEISEKKASP
LRKLMQLSSTMSTDSTNQDSGISDTSGGAGGMNSKWKLLKTLKERKEMNNQVKIKEEEEG
VKEKPGGGDGVRGNHSNDNPFYSNIDSMPDIRPRRKSIPLVSELVLKTMAATKRNAGLTS
AIPRPMLNDEDLKTHVYKKSLQALIYPISSTTPHNFTPYNATSPTYCYECEGLLWGIARQ
GVRCTECGVKCHEKCKDLLNADCLQMCFAGAAEKSSKHGAEDKAQSVMTAMQERMKQRVC
DKPEIFELLRAIFCCDEKSHAGHMKAVTQSVLDGTSKWSAKIAITVICAQGLIAKDKSGT
SDPYVTVQVGKVKKRTRTMPQELNPVWNEKFHFECHNSSDRIKVRVWDEDNDLKSKLRQK
LTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKVAPYH
VQYTCLHENIFHYLCEQNSGLVKLPQAKGDDAWKIYFDETPQEIVDEFAMRYGIEPIYQA
MTHFHCLSTKYLCPGVPYAMSFLLANINAHYAHTTASSAVSASDRFAASNFGKEKFVKLL
DQLHNSLRIDLSSYRTVFPASYPEKLEDLKCVVDLLTSITFFRMKVQELSCPPRASTVVK
DCVKACLRSTYQFVFQHCYEIYSKEFQVDPNEKVDPEDQGPRLDSLDFWHRLIACLVSVI
EEDRNVYSPKMNQFPHELNVGQLSASTIFSLLAVDIKYALEEHEQHRLCESSAYMNLNFA
VKRFYVKHIKEVPPYKGSVPEYPAWFEPFVMQWLNENDDVSLEYLKGAYARDKKDGFQRS
SEHSLFSNSVVDVFTQLSQCFDVVSKLECPDPEIWKRYMRRFAKTVVKVLLSYVEIVKLD
FPEQMKDERIACVLMNNIQQLRIQLEKMFEQMGGEKLEEDAANILKDLQQQLNSILDELA
LQFANSLKPCISQSVRELGERLFNIKSNGAQAKAGSTEADEVLRPLMDLLDGSLTMYAQS
CEKTVLKRLLKELWKIVIRTIEKTIVLPPINDKTIIFKNLTDNAKNIAANAKIEDMGRLF
KTHISSKQDVKSTLTSVIELEKNLSSSQTAVLNVCLDTIKSYFHAGGNGLKKNYLEKSPE
LQSLRYALSLYTQSTDDLITTFNTTQAANMSQKGVQNTPAQEASRRRCLEQDENAENTNQ
PPPPLKLRLNKDLSQDSGNVDDEVVGEVSVQVDLFTQAGSGEHKVTVKVIAANDLKWASP
SGVVFRPYVEINLTGPHLQDKKRKMATKSKTNNWSPKYNETFHFSFNTASEEQLDFYELH
ICVRDYCFAREDRLVGVALLQLKDIVDQRSCARWLPLFKSITKDETGWTILRILWQRSND
EVAKEFVKLKSEIRQEPSEKDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g15904.t1 | CDD | cd00029 | C1 | 1774 | 1823 | 4.00202E-19 |
| 23 | g15904.t1 | CDD | cd04027 | C2B_Munc13 | 1900 | 2026 | 6.21541E-88 |
| 17 | g15904.t1 | Coils | Coil | Coil | 177 | 218 | - |
| 21 | g15904.t1 | Coils | Coil | Coil | 277 | 297 | - |
| 20 | g15904.t1 | Coils | Coil | Coil | 557 | 577 | - |
| 19 | g15904.t1 | Coils | Coil | Coil | 881 | 928 | - |
| 18 | g15904.t1 | Coils | Coil | Coil | 1658 | 1678 | - |
| 22 | g15904.t1 | Coils | Coil | Coil | 2498 | 2525 | - |
| 14 | g15904.t1 | Gene3D | G3DSA:3.30.60.20 | - | 1766 | 1824 | 6.8E-19 |
| 16 | g15904.t1 | Gene3D | G3DSA:2.60.40.150 | - | 1885 | 2031 | 5.0E-50 |
| 13 | g15904.t1 | Gene3D | G3DSA:1.10.357.50 | - | 2356 | 2526 | 6.5E-81 |
| 15 | g15904.t1 | Gene3D | G3DSA:2.60.40.150 | - | 2777 | 2922 | 4.4E-18 |
| 32 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 468 | - |
| 45 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 487 | - |
| 41 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 736 | - |
| 30 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1134 | - |
| 35 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1134 | - |
| 33 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1160 | 1200 | - |
| 42 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1173 | 1200 | - |
| 39 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1223 | 1244 | - |
| 34 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1230 | 1244 | - |
| 31 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1276 | 1295 | - |
| 38 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1276 | 1340 | - |
| 43 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1472 | 1505 | - |
| 36 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1579 | 1654 | - |
| 37 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1579 | 1600 | - |
| 44 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1623 | 1650 | - |
| 40 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1673 | 1704 | - |
| 46 | g15904.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1673 | 1689 | - |
| 6 | g15904.t1 | PANTHER | PTHR10480 | PROTEIN UNC-13 HOMOLOG | 1317 | 2956 | 0.0 |
| 7 | g15904.t1 | PRINTS | PR00360 | C2 domain signature | 1917 | 1929 | 2.1E-6 |
| 9 | g15904.t1 | PRINTS | PR00360 | C2 domain signature | 1941 | 1954 | 2.1E-6 |
| 8 | g15904.t1 | PRINTS | PR00360 | C2 domain signature | 1962 | 1970 | 2.1E-6 |
| 5 | g15904.t1 | Pfam | PF00130 | Phorbol esters/diacylglycerol binding domain (C1 domain) | 1774 | 1823 | 6.0E-11 |
| 2 | g15904.t1 | Pfam | PF00168 | C2 domain | 1901 | 2009 | 1.4E-27 |
| 3 | g15904.t1 | Pfam | PF06292 | Domain of Unknown Function (DUF1041) | 2217 | 2323 | 4.0E-32 |
| 4 | g15904.t1 | Pfam | PF10540 | Munc13 (mammalian uncoordinated) homology domain | 2561 | 2721 | 4.9E-46 |
| 1 | g15904.t1 | Pfam | PF00168 | C2 domain | 2804 | 2917 | 2.0E-12 |
| 29 | g15904.t1 | ProSitePatterns | PS00479 | Zinc finger phorbol-ester/DAG-type signature. | 1774 | 1823 | - |
| 51 | g15904.t1 | ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 1773 | 1823 | 14.325 |
| 48 | g15904.t1 | ProSiteProfiles | PS50004 | C2 domain profile. | 1901 | 1993 | 17.028 |
| 50 | g15904.t1 | ProSiteProfiles | PS51258 | Munc13-homology domain 1 (MHD1) profile. | 2314 | 2457 | 28.731 |
| 49 | g15904.t1 | ProSiteProfiles | PS51259 | Munc13-homology domain 2 (MHD2) profile. | 2560 | 2722 | 27.385 |
| 47 | g15904.t1 | ProSiteProfiles | PS50004 | C2 domain profile. | 2804 | 2899 | 14.467 |
| 28 | g15904.t1 | SMART | SM00109 | c1_12 | 1774 | 1823 | 3.2E-17 |
| 26 | g15904.t1 | SMART | SM00239 | C2_3c | 1901 | 2008 | 1.1E-20 |
| 25 | g15904.t1 | SMART | SM01145 | DUF1041_2a | 2216 | 2323 | 1.9E-39 |
| 27 | g15904.t1 | SMART | SM00239 | C2_3c | 2804 | 2914 | 6.2E-14 |
| 10 | g15904.t1 | SUPERFAMILY | SSF57889 | Cysteine-rich domain | 1763 | 1823 | 1.79E-15 |
| 12 | g15904.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1902 | 2041 | 3.27E-31 |
| 11 | g15904.t1 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2780 | 2920 | 5.21E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005509 | calcium ion binding | MF |
| GO:0007268 | chemical synaptic transmission | BP |
| GO:0035556 | intracellular signal transduction | BP |
| GO:0019992 | diacylglycerol binding | MF |
| GO:0005543 | phospholipid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K15293 (protein unc-13 A/B/C)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed