General information for g15904.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein unc-13 homolog B.
Parent gene
- The parent gene g15904 is located on chr_4: 7254060..7286298 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15904 | g15904.t3 | isoform | g15904.t3 | 7254060 | 7286298 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon1 | 7254060 | 7254224 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS1 | 7254060 | 7254224 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon2 | 7254287 | 7254419 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS2 | 7254287 | 7254419 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon3 | 7254684 | 7254849 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS3 | 7254684 | 7254849 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon4 | 7254909 | 7255007 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS4 | 7254909 | 7255007 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon5 | 7255944 | 7256042 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS5 | 7255944 | 7256042 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon6 | 7256237 | 7256486 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS6 | 7256237 | 7256486 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon7 | 7256544 | 7256678 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS7 | 7256544 | 7256678 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon8 | 7256734 | 7256998 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS8 | 7256734 | 7256998 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon9 | 7257540 | 7257706 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS9 | 7257540 | 7257706 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon10 | 7257774 | 7257995 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS10 | 7257774 | 7257995 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon11 | 7258104 | 7258550 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS11 | 7258104 | 7258550 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon12 | 7258609 | 7258893 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS12 | 7258609 | 7258893 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon13 | 7259127 | 7259724 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS13 | 7259127 | 7259724 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon14 | 7259929 | 7260070 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS14 | 7259929 | 7260070 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon15 | 7271790 | 7271896 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS15 | 7271790 | 7271896 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon16 | 7272656 | 7272788 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS16 | 7272656 | 7272788 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon17 | 7274436 | 7274537 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS17 | 7274436 | 7274537 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon18 | 7274660 | 7274777 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS18 | 7274660 | 7274777 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon19 | 7274839 | 7274913 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS19 | 7274839 | 7274913 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon20 | 7277144 | 7277260 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS20 | 7277144 | 7277260 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon21 | 7280882 | 7283610 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS21 | 7280882 | 7283610 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon22 | 7283676 | 7284686 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS22 | 7283676 | 7284686 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon23 | 7284917 | 7285787 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS23 | 7284917 | 7285787 |
| chr_4 | g15904 | g15904.t3 | exon | g15904.t3.exon24 | 7285855 | 7286298 |
| chr_4 | g15904 | g15904.t3 | cds | g15904.t3.CDS24 | 7285855 | 7286298 |
| chr_4 | g15904 | g15904.t3 | TSS | g15904.t3 | NA | NA |
| chr_4 | g15904 | g15904.t3 | TTS | g15904.t3 | NA | NA |
Sequences
>g15904.t3 Gene=g15904 Length=8880
ATGGATCAATCACACTTATCAGATCATTCGTCAGCGCAATCGTCGCCCGTACATTTACAA
AAGATGCAATTTAAACTCCAACAGCGATTAGCAGAGCAGCAGCAGCAACAGCAGGTCACA
CAAATGTCACCAATGATGGATCGACGTAAAATCGGCGCCAAAGCTGCTTCTGCTCTTGAT
TTATCTAACGGGCAGCCGCCAATGGATGCTGCAATGCTTTCTCACCTTCAACATCAACAA
AATATTCAGCAATTACCACCAAATCCACAACATTCATTAATGCTGCATCAACAGCAAAAA
TTTCCACATCAAAATCATCCCATTGAACAGCAAATGTACCAACAATTTCATCAGAAACCA
ATGCTTAATCAATTAATGAAAGTTCAGGGAAATAATGCTTCATTGGCTGATTTTAGATCG
ATTGTTCATGGAAGTACTGCTCAGCTTGGTGAAATGTTAGCCAGTAAAGAGCAAATAAAT
GCAATAGTAAACGCACAAAAGCATTCTGATTATATTGTTGAAGATTACATGGACAAAATA
CAAACAAGAATTGCATTATTAGAGACAGAATTGAAATTTGCTGATCGAAAACTTCACGTA
CTTTATACAGAATACAATGAAATGTTGGCAAAAATTGATAAATTAGAAAATTTGACAATT
GCACAGCAGCAAGTTTTGGGAAATTTACTTGATTTATGTAGTAATCAGACACATGAAGTT
CATGCAGCAAAAGCAGTACAAGCTAAAGCTGCACAATTATTTGGCATTGATCCACAAGCA
TTGCTTGCAATGAGCAATTCTGAGGCATTTGTTGAGCAGCCATTTCAAAGTGAAGCACTT
GACACAACAGCAGCAGAATTCAGTGAATTACTTGAAGATCTTAAAAATGAAGCGATAATT
GATGGCTTAAGAGGACAACCACAGCAACTTCAACAATTGCAGCAATTACAGCAAGCACAA
GCATTTGCCAATGACTATCAAGGCGATGCTGATTATGAAGCTCTTATTGATATGATAAAC
AAACAAATGAAATTTCAACAACAGCCACAAGCTACTGATTTCACTTTTTTTAATCGTGGC
GAACAAGCTGAAGAGTTTTTAAAAGCTCAAGAAGCCATGAAGCAGCAAATTCTTCAACAA
CAAAATTCTATGGAATTACTTAAAAATTTATCAGAAAATCAATTGAAAATGGAGATGGAT
TTTTTTCGCAGCGGCGAGATCAACAAAAGCCTTTTTGACACACTCCAAGCAAGTGTTCAG
CCGCAGCCCTCTACATTAGACATGATCTATGAGGACAATGAAGAAAAAGCTGAAGGCAAA
GAACCATCACCAGTAACAGAATCAAAAAGTGAATCTCAAAAAGGACATGAATCATCAACC
GAAGAAAAATCATCAAGTTCACGTAAACCAAAGTCAAAGAAAAAGAAACATCATCAACAG
CTACAACAACAACAATTTCAACTTCAAAGTGATGATCAATTAATTCATGAAATAATTGAA
GAAATTTTGAAATTAGAAAATTTGACAAATTTACTCAATAAAAATCAGCATGATGAATTA
AAAACATTGATAAAAAATGACATCAAATCTTTTCATAATTTAAAAAAATTAGACATGAAT
TTTGTTTCACTTTTGGTCAATCCTGTTACAAGAATTTCACCAAGTAGTTCAATGAGTCTT
GAAGAAGAAGATCAAAGATTTGAATCATTGATGAAAAAGCTCAAGAAAAATTTAGAAGTT
TTGAAAAAGATTGAACCAACAGCAAGTGAAGCTACATGTTCAAAATCATCACTTTATAAT
GATGATGAATATTTGCAGTCACTAAGAAAATCACTTGATCGTCATAATTCAATGCAATTG
CTGTTACAATTACAAAATCCAAATTTAAATTCAACCAACAAATCTGTACTTGCTTCAAGT
GATTTTTTATCGGATGATCAGCTGGATGGCGGTGAAAGTCCACCACCTCCAGCGCCTAAT
GGTGATCTCTACTATCCAAATGATGAAACTTATAATGTCGAACAAGAATGGAATCCTTTT
CATGTTGATATTATGATGATGAAACAAAATCAACAAAGTCAACCACGACAACTTTCACCA
TATCGAAGAAATACATCACCAAAGAAAAGTGATTCTGGTTTAAGCTCAATGTCAGGCTTT
TCAAGTTTTGAGAAATCACCAAATTCACCATCATATTCACTGCCATATGATCATTCTAAC
AACTATAGAAGCAACATTCGATCACAAGATTATGTGAAAATGTTAAACACTTATCAACAA
ATGAAAGTTTCAGCTGCTTCACAAGATATTCAAAATAGTGGAAAAACATTTCCAGTAGAA
CAACCAACATCAATGTCGCCCTTTCTATTCTCAGATGTCCCAAACAACACCAATAGTAGC
AATGTATCGACAAATTCTCAATTAGCTCCGCCCGAGGGCATCTATGGCGAAGAGAACTTA
AATTATATAAAAGAACTTTCACAAAATGTTCCAATCTGCTCAATTTATGAAAACAAATCA
ATTTTTGACAATGTTTCTGTCATTAAACCACCATCAGCATGGGAAGTTTACATGAAAAAT
CAAAATGAAAGTCAACAATCAGTGCCCTATCCAGATCTTATAAATGTTAATCAGGAACAA
AATACTGAAGCTCTGAAAAATTTACAACAGCAGCAGCAACTTGAAGAATTAATGGAACAA
AGAAGAAAACTTGATTTACAAAAGCAACAATTGAAACAAGAACAGCAATTGTTGTTACAG
AAAAAAGTTCAAAAAAGATCACAAAATTTGACTGATCATTTAGTTTATTATCCATCACAA
CCGTCAAATGAATATCAACGTGATTACCATCCACAACATCATCAAAATCTACAACATGAT
GAATTTATGCAGCATGCGCATGCACAACATCAAGTTCATCTTCAAAGACAAATGAGAACT
GTTGAAGATCCAAGAATTGGACAACCTGAAAGAAATGATAAGAAAAAACATGCTGTACTT
AATAAAGTTCAAAATTGGCTACCAGAAATTAAACTTAAAAAAGGCTCAAAAAGACATCGA
AGTCATAGTTTGCCTGAAGTTGATGCTGATGAAGCTTATGATCCAAGAACTTACAAAATG
AATCTTAAAAAAGGCCAACAAGGTCAAGCAGGAACTTCTAATGGTAAAAAGGGTGAAATT
TATGTCATGAAATCTTATATGAAAGGAAAAAAGAAAGATTTAGTTCGAACAATGTCATCA
ATTATGCATAAAGCTCAAAAAAGTTATCGTCGTCATAGTTTTTCACATCATCAATTATCA
GATGAAGAAGCACCAGCGACTGATCCATCACCAAAATTTCAACATGTTCGTACAACACGA
AGCATGTCAGCAGCACCAAGTAAACTTCGTTCTTATTCTGACACTGAAACAGACATAAGT
TCTATGTTTAGTGATAGTGAAGAACATGGTGCACCACCAGTTTTTGCAACAATTGGCGAC
TCGAAGTCAAAACATTCTGATGCTGGTGACTCAGATCGTAATGCGGTTAGTGACTCATCA
AATGGAAGTAAACGACAACAAGAACAGCAGCAGTCACAAGAGCAACCGTCAGAAGGAAAT
TTCAATCTGAATTTCACCAGCACCAGTATGGAATTTGCAGCGAGTCGCAAAGTTGGAATG
TTGAGAAAAAAGTCAGCAAATGATGATGTTGGTGAAAGTGGAAGTCCAACAGGCAACGAA
AATACAGAAATGATTTTTGAAAAAACCAAAAATCCACAGAAATTGATGAAAACTCATTCA
ATATTTGTTGATTCAGTTGATGATGAAAATGACAAATTTAAACCAATTGCAGCACCAAGG
CATGAAAGTTTAGAATCTAAAGACAGTATCAAACCAATTCCAAGTCCAAGGTTTGAACAT
TCGAGATCAAATAGTATCAAAACAAGTCTTGATGTGCCAGGCAAAGAAGAAGAAGATTCA
AAATCACAACATTCATTTAGAACATCAATTTCAAGTCGTAGACAAAGTACAGAAGATTCA
ATTGACACTGATGATGAATATTTTTATTATGAAATGAGAAATTTAGAAGAACTTGAAAGA
AATAGTCATATGGAATCACTTTTACAAGATGATAAAAGCACATTGATAAATAACATCATG
CAATTAGAAACATCAACTGTTGAACCTGATGAAAATGTTAAAATGAACATGAGTCGTGTT
TTAAATGAACTCAAAATAAAAGTCAAACAACGTGAACCAATTGATGAAATTCGACAAGAT
AAAATTAATAACAACAACAATAATAAAAATATTTACGATAAATTTTCATTGGTTTCAACT
AATATCGCAGATTTGCCATGGAATCGTGAGTCAGACGATGATGGTGAATTTATGGATCAG
TTGAATCAATTTGAAAGTGAAATTCGTGATACAAGTTATGGAAAAGTTAAGAAGAAACGT
AAAAAATCTAAACGTGGTGGACGTTATGAAAAATCATCATCATCGGTATCATCTGATGAT
GAAAAAGCTGTATCAATGAGACAAGAACTTGATGACTTTCATTTGAATGTGGATAAATAT
GAACGACCACATTCACAATCATCAGGTGTAACTTCAGGTCCCGATTCGCCCATTGCAAGT
GATGATGAAATTGCAAGTGATGCAGTTGAAAGTGGTGAAGGTCAACAGCAACAAGTTGAA
CATTATGATGATTTTAAACAGCGTCAAAAAAATGAGCGGCTCCTCGAGCATTCACAGCAG
CCGCTTCAACACCAGAATGATGATCGAGGAGCGAACAATGAAGGATCAGTTCAAGTCGGT
AGTGCTGCTGCCGCGAGTGAACTAAAACATGAAGAAATAAGTGAGAAAAAAGCATCGCCA
TTAAGAAAATTGATGCAATTGTCATCAACAATGTCAACTGATTCGACAAATCAAGATAGT
GGTATAAGTGATACAAGTGGTGGTGCAGGTGGAATGAATAGTAAATGGAAATTATTAAAA
ACATTAAAAGAAAGAAAAGAAATGAATAATCAAGTGAAAATAAAAGAAGAAGAAGAAGGT
GTTAAAGAAAAGCCGGGCGGTGGAGATGGAGTGCGCGGCAATCATTCAAATGACAATCCG
TTCTATAGCAACATTGACAGCATGCCTGACATTCGACCGCGTAGAAAATCAATTCCGCTC
GTGTCAGAACTTACAATGGCAGCTACAAAGCGAAATGCTGGATTAACATCTGCAATACCA
CGACCAATGTTAAATGATGAGGATTTGAAAACACATGTGTACAAAAAATCTTTACAAGCG
CTCATATATCCAATCTCGTCAACCACACCGCATAATTTTACGCCTTATAATGCCACATCG
CCGACTTATTGCTACGAATGTGAAGGTTTGCTTTGGGGAATTGCTCGACAAGGTGTCCGT
TGTACAGAATGTGGAGTGAAATGTCACGAAAAATGCAAAGACCTTCTCAACGCGGATTGC
CTGCAAATGTGCTTTGCAGGGGCTGCTGAGAAGAGCTCGAAACATGGCGCCGAGGACAAG
GCGCAATCTGTCATGACAGCTATGCAGGAACGCATGAAACAACGTGTCTGTGACAAACCG
GAAATATTTGAATTGCTTAGAGCGATATTTTGCTGTGATGAGAAAAGTCATGCCGGTCAC
ATGAAGGCCGTTACGCAAAGTGTACTTGACGGGACCAGCAAATGGTCTGCAAAAATTGCC
ATTACAGTAATATGTGCACAAGGGCTGATAGCAAAAGACAAAAGTGGTACGAGCGATCCC
TATGTGACGGTACAAGTTGGAAAAGTCAAAAAACGCACACGAACAATGCCACAGGAATTG
AATCCAGTGTGGAATGAAAAATTTCATTTTGAATGTCACAACTCCTCAGATCGTATTAAA
GTTCGTGTATGGGACGAGGATAATGATTTAAAATCTAAACTTCGGCAAAAGCTGACACGT
GAGTCCGATGACTTTCTTGGTCAAACAATCATCGAAGTGCGCACACTATCAGGTGAAATG
GACGTATGGTACAATCTTGAAAAACGCACAGACAAATCGGCAGTGTCAGGCGCTATTCGG
CTGCACATTTCAGTGGAAATCAAGGGCGAGGAAAAAGTTGCGCCCTATCACGTACAATAC
ACATGCTTGCATGAAAACATTTTTCACTATCTGTGTGAGCAGAACAGCGGACTGGTGAAG
CTGCCACAAGCTAAAGGCGATGATGCGTGGAAAATTTATTTTGATGAAACGCCACAGGAA
ATTGTAGATGAGTTTGCAATGCGTTACGGCATAGAACCAATATATCAGGCCATGACTCAC
TTTCATTGTCTTTCGACCAAATATTTATGTCCTGGTGTACCATATGCTATGAGTTTTCTA
TTGGCCAATATCAATGCTCATTATGCTCACACAACTGCCTCTAGTGCTGTTTCAGCAAGT
GATCGATTTGCTGCTAGTAATTTTGGTAAAGAGAAATTCGTAAAGCTTCTGGACCAACTG
CACAATTCATTGCGTATTGATTTATCGTCATATCGCACAGTCTTCCCTGCTTCATATCCT
GAGAAACTCGAAGATCTCAAATGTGTCGTCGATTTGCTCACAAGTATCACTTTTTTTCGT
ATGAAAGTTCAAGAACTTTCGTGTCCACCACGCGCAAGCACGGTTGTTAAAGACTGTGTC
AAAGCATGCCTTAGATCCACTTATCAATTTGTATTTCAACATTGTTATGAAATTTACAGT
AAAGAATTTCAGGTGGATCCAAATGAAAAAGTCGATCCAGAAGACCAGGGACCACGACTT
GATTCACTCGATTTCTGGCATCGTCTTATTGCATGTCTTGTGTCAGTAATTGAAGAAGAC
CGAAATGTTTATAGTCCAAAAATGAATCAATTTCCGCATGAATTGAATGTCGGTCAACTT
TCAGCTTCGACAATATTTTCATTGTTGGCAGTCGATATTAAATATGCCTTGGAAGAACAC
GAACAGCATCGATTATGTGAATCATCAGCTTACATGAATCTCAATTTTGCTGTGAAACGT
TTTTATGTAAAGCACATTAAAGAAGTGCCGCCATATAAAGGTTCAGTGCCAGAATATCCA
GCATGGTTTGAGCCATTTGTGATGCAATGGTTGAATGAAAATGATGATGTATCATTAGAA
TATCTTAAGGGTGCCTATGCGAGAGATAAAAAAGATGGGTTCCAACGAAGCAGCGAGCAT
TCGCTGTTCTCAAACTCAGTGGTCGACGTGTTCACGCAGCTCTCGCAGTGCTTCGATGTC
GTTAGCAAGCTCGAGTGTCCCGATCCAGAAATTTGGAAGCGGTACATGAGGCGCTTTGCC
AAGACAGTCGTTAAGGTTCTACTCTCGTATGTCGAGATAGTCAAACTTGATTTCCCCGAA
CAAATGAAGGACGAGAGAATCGCCTGTGTCCTCATGAACAACATTCAGCAATTGCGTATT
CAACTTGAAAAAATGTTTGAACAAATGGGTGGTGAGAAATTGGAAGAAGATGCAGCAAAT
ATTTTAAAAGATTTACAACAACAGTTAAATAGCATACTGGACGAATTGGCATTGCAATTT
GCAAACAGTCTGAAGCCATGCATTTCTCAAAGCGTACGTGAGTTAGGCGAGCGCTTGTTC
AACATTAAATCTAATGGAGCGCAAGCGAAAGCCGGCTCTACGGAAGCTGATGAAGTGCTT
CGTCCCTTGATGGACCTTCTCGATGGCTCTCTCACAATGTATGCACAATCCTGCGAAAAG
ACGGTCCTGAAACGCTTATTGAAGGAATTATGGAAGATTGTGATCAGAACCATCGAGAAA
ACCATCGTGCTGCCGCCAATCAACGACAAGACTATCATTTTCAAAAATCTCACCGACAAT
GCAAAGAATATTGCAGCAAATGCAAAAATCGAGGACATGGGTAGATTATTTAAGACGCAC
ATCTCATCAAAACAAGACGTCAAGAGTACTTTAACTTCTGTAATCGAACTTGAGAAGAAC
CTTTCATCCTCACAAACGGCTGTCTTGAATGTGTGTCTCGATACAATTAAGTCGTACTTC
CATGCTGGTGGTAATGGACTCAAGAAAAACTATCTCGAAAAATCGCCAGAACTGCAGAGT
TTGCGATATGCACTGAGTCTCTACACGCAATCGACTGATGATCTTATTACAACATTCAAC
ACAACACAAGCAGCAAATATGTCACAGAAAGGTGTACAAAATACACCAGCACAAGAAGCA
TCACGACGAAGATGCCTCGAGCAGGACGAGAATGCTGAAAACACTAATCAGCCACCACCA
CCATTGAAATTGAGACTGAATAAGGATCTTAGTCAAGATTCGGGCAATGTTGATGATGAA
GTTGTGGGAGAAGTTTCAGTTCAGGTTGATTTGTTTACTCAAGCTGGATCAGGTGAACAT
AAAGTTACTGTCAAAGTCATTGCCGCAAATGATCTCAAATGGGCAAGTCCATCAGGTGTC
GTATTTCGTCCTTATGTTGAAATTAATCTTACTGGACCACATTTGCAAGATAAGAAACGT
AAAATGGCAACAAAATCAAAGACCAACAACTGGTCGCCAAAATACAATGAGACTTTTCAT
TTTTCCTTCAACACAGCATCAGAAGAACAATTGGACTTTTATGAACTTCACATTTGTGTA
CGTGATTATTGCTTTGCTCGTGAAGATCGTCTCGTTGGCGTTGCTTTATTGCAGCTTAAA
GATATCGTTGATCAGCGTTCATGTGCACGTTGGTTGCCATTGTTCAAGAGCATCACAAAA
GATGAGACTGGTTGGACAATATTGAGAATTTTATGGCAGCGCAGCAATGATGAAGTTGCA
AAAGAATTCGTAAAACTAAAATCAGAAATTCGACAAGAACCATCAGAAAAAGACAAATAA
>g15904.t3 Gene=g15904 Length=2959
MDQSHLSDHSSAQSSPVHLQKMQFKLQQRLAEQQQQQQVTQMSPMMDRRKIGAKAASALD
LSNGQPPMDAAMLSHLQHQQNIQQLPPNPQHSLMLHQQQKFPHQNHPIEQQMYQQFHQKP
MLNQLMKVQGNNASLADFRSIVHGSTAQLGEMLASKEQINAIVNAQKHSDYIVEDYMDKI
QTRIALLETELKFADRKLHVLYTEYNEMLAKIDKLENLTIAQQQVLGNLLDLCSNQTHEV
HAAKAVQAKAAQLFGIDPQALLAMSNSEAFVEQPFQSEALDTTAAEFSELLEDLKNEAII
DGLRGQPQQLQQLQQLQQAQAFANDYQGDADYEALIDMINKQMKFQQQPQATDFTFFNRG
EQAEEFLKAQEAMKQQILQQQNSMELLKNLSENQLKMEMDFFRSGEINKSLFDTLQASVQ
PQPSTLDMIYEDNEEKAEGKEPSPVTESKSESQKGHESSTEEKSSSSRKPKSKKKKHHQQ
LQQQQFQLQSDDQLIHEIIEEILKLENLTNLLNKNQHDELKTLIKNDIKSFHNLKKLDMN
FVSLLVNPVTRISPSSSMSLEEEDQRFESLMKKLKKNLEVLKKIEPTASEATCSKSSLYN
DDEYLQSLRKSLDRHNSMQLLLQLQNPNLNSTNKSVLASSDFLSDDQLDGGESPPPPAPN
GDLYYPNDETYNVEQEWNPFHVDIMMMKQNQQSQPRQLSPYRRNTSPKKSDSGLSSMSGF
SSFEKSPNSPSYSLPYDHSNNYRSNIRSQDYVKMLNTYQQMKVSAASQDIQNSGKTFPVE
QPTSMSPFLFSDVPNNTNSSNVSTNSQLAPPEGIYGEENLNYIKELSQNVPICSIYENKS
IFDNVSVIKPPSAWEVYMKNQNESQQSVPYPDLINVNQEQNTEALKNLQQQQQLEELMEQ
RRKLDLQKQQLKQEQQLLLQKKVQKRSQNLTDHLVYYPSQPSNEYQRDYHPQHHQNLQHD
EFMQHAHAQHQVHLQRQMRTVEDPRIGQPERNDKKKHAVLNKVQNWLPEIKLKKGSKRHR
SHSLPEVDADEAYDPRTYKMNLKKGQQGQAGTSNGKKGEIYVMKSYMKGKKKDLVRTMSS
IMHKAQKSYRRHSFSHHQLSDEEAPATDPSPKFQHVRTTRSMSAAPSKLRSYSDTETDIS
SMFSDSEEHGAPPVFATIGDSKSKHSDAGDSDRNAVSDSSNGSKRQQEQQQSQEQPSEGN
FNLNFTSTSMEFAASRKVGMLRKKSANDDVGESGSPTGNENTEMIFEKTKNPQKLMKTHS
IFVDSVDDENDKFKPIAAPRHESLESKDSIKPIPSPRFEHSRSNSIKTSLDVPGKEEEDS
KSQHSFRTSISSRRQSTEDSIDTDDEYFYYEMRNLEELERNSHMESLLQDDKSTLINNIM
QLETSTVEPDENVKMNMSRVLNELKIKVKQREPIDEIRQDKINNNNNNKNIYDKFSLVST
NIADLPWNRESDDDGEFMDQLNQFESEIRDTSYGKVKKKRKKSKRGGRYEKSSSSVSSDD
EKAVSMRQELDDFHLNVDKYERPHSQSSGVTSGPDSPIASDDEIASDAVESGEGQQQQVE
HYDDFKQRQKNERLLEHSQQPLQHQNDDRGANNEGSVQVGSAAAASELKHEEISEKKASP
LRKLMQLSSTMSTDSTNQDSGISDTSGGAGGMNSKWKLLKTLKERKEMNNQVKIKEEEEG
VKEKPGGGDGVRGNHSNDNPFYSNIDSMPDIRPRRKSIPLVSELTMAATKRNAGLTSAIP
RPMLNDEDLKTHVYKKSLQALIYPISSTTPHNFTPYNATSPTYCYECEGLLWGIARQGVR
CTECGVKCHEKCKDLLNADCLQMCFAGAAEKSSKHGAEDKAQSVMTAMQERMKQRVCDKP
EIFELLRAIFCCDEKSHAGHMKAVTQSVLDGTSKWSAKIAITVICAQGLIAKDKSGTSDP
YVTVQVGKVKKRTRTMPQELNPVWNEKFHFECHNSSDRIKVRVWDEDNDLKSKLRQKLTR
ESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEKVAPYHVQY
TCLHENIFHYLCEQNSGLVKLPQAKGDDAWKIYFDETPQEIVDEFAMRYGIEPIYQAMTH
FHCLSTKYLCPGVPYAMSFLLANINAHYAHTTASSAVSASDRFAASNFGKEKFVKLLDQL
HNSLRIDLSSYRTVFPASYPEKLEDLKCVVDLLTSITFFRMKVQELSCPPRASTVVKDCV
KACLRSTYQFVFQHCYEIYSKEFQVDPNEKVDPEDQGPRLDSLDFWHRLIACLVSVIEED
RNVYSPKMNQFPHELNVGQLSASTIFSLLAVDIKYALEEHEQHRLCESSAYMNLNFAVKR
FYVKHIKEVPPYKGSVPEYPAWFEPFVMQWLNENDDVSLEYLKGAYARDKKDGFQRSSEH
SLFSNSVVDVFTQLSQCFDVVSKLECPDPEIWKRYMRRFAKTVVKVLLSYVEIVKLDFPE
QMKDERIACVLMNNIQQLRIQLEKMFEQMGGEKLEEDAANILKDLQQQLNSILDELALQF
ANSLKPCISQSVRELGERLFNIKSNGAQAKAGSTEADEVLRPLMDLLDGSLTMYAQSCEK
TVLKRLLKELWKIVIRTIEKTIVLPPINDKTIIFKNLTDNAKNIAANAKIEDMGRLFKTH
ISSKQDVKSTLTSVIELEKNLSSSQTAVLNVCLDTIKSYFHAGGNGLKKNYLEKSPELQS
LRYALSLYTQSTDDLITTFNTTQAANMSQKGVQNTPAQEASRRRCLEQDENAENTNQPPP
PLKLRLNKDLSQDSGNVDDEVVGEVSVQVDLFTQAGSGEHKVTVKVIAANDLKWASPSGV
VFRPYVEINLTGPHLQDKKRKMATKSKTNNWSPKYNETFHFSFNTASEEQLDFYELHICV
RDYCFAREDRLVGVALLQLKDIVDQRSCARWLPLFKSITKDETGWTILRILWQRSNDEVA
KEFVKLKSEIRQEPSEKDK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 25 | g15904.t3 | CDD | cd00029 | C1 | 1771 | 1820 | 3.99797E-19 |
| 24 | g15904.t3 | CDD | cd04027 | C2B_Munc13 | 1897 | 2023 | 6.209E-88 |
| 17 | g15904.t3 | Coils | Coil | Coil | 177 | 218 | - |
| 22 | g15904.t3 | Coils | Coil | Coil | 277 | 297 | - |
| 21 | g15904.t3 | Coils | Coil | Coil | 557 | 577 | - |
| 20 | g15904.t3 | Coils | Coil | Coil | 881 | 928 | - |
| 18 | g15904.t3 | Coils | Coil | Coil | 1658 | 1678 | - |
| 23 | g15904.t3 | Coils | Coil | Coil | 2495 | 2522 | - |
| 19 | g15904.t3 | Coils | Coil | Coil | 2957 | 2959 | - |
| 14 | g15904.t3 | Gene3D | G3DSA:3.30.60.20 | - | 1763 | 1821 | 6.8E-19 |
| 15 | g15904.t3 | Gene3D | G3DSA:2.60.40.150 | - | 1882 | 2028 | 5.0E-50 |
| 13 | g15904.t3 | Gene3D | G3DSA:1.10.357.50 | - | 2353 | 2523 | 6.5E-81 |
| 16 | g15904.t3 | Gene3D | G3DSA:2.60.40.150 | - | 2774 | 2919 | 4.4E-18 |
| 33 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 468 | - |
| 47 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 487 | - |
| 43 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 689 | 736 | - |
| 31 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1134 | - |
| 36 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1112 | 1134 | - |
| 34 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1160 | 1200 | - |
| 44 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1173 | 1200 | - |
| 42 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1223 | 1244 | - |
| 35 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1230 | 1244 | - |
| 32 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1276 | 1295 | - |
| 41 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1276 | 1340 | - |
| 45 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1472 | 1505 | - |
| 37 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1579 | 1654 | - |
| 38 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1579 | 1600 | - |
| 46 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1623 | 1650 | - |
| 39 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1672 | 1689 | - |
| 40 | g15904.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1672 | 1708 | - |
| 6 | g15904.t3 | PANTHER | PTHR10480 | PROTEIN UNC-13 HOMOLOG | 1318 | 2953 | 0.0 |
| 9 | g15904.t3 | PRINTS | PR00360 | C2 domain signature | 1914 | 1926 | 2.1E-6 |
| 8 | g15904.t3 | PRINTS | PR00360 | C2 domain signature | 1938 | 1951 | 2.1E-6 |
| 7 | g15904.t3 | PRINTS | PR00360 | C2 domain signature | 1959 | 1967 | 2.1E-6 |
| 5 | g15904.t3 | Pfam | PF00130 | Phorbol esters/diacylglycerol binding domain (C1 domain) | 1771 | 1820 | 6.0E-11 |
| 2 | g15904.t3 | Pfam | PF00168 | C2 domain | 1898 | 2006 | 1.4E-27 |
| 3 | g15904.t3 | Pfam | PF06292 | Domain of Unknown Function (DUF1041) | 2214 | 2320 | 4.0E-32 |
| 4 | g15904.t3 | Pfam | PF10540 | Munc13 (mammalian uncoordinated) homology domain | 2558 | 2718 | 4.9E-46 |
| 1 | g15904.t3 | Pfam | PF00168 | C2 domain | 2801 | 2914 | 2.0E-12 |
| 30 | g15904.t3 | ProSitePatterns | PS00479 | Zinc finger phorbol-ester/DAG-type signature. | 1771 | 1820 | - |
| 52 | g15904.t3 | ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 1770 | 1820 | 14.325 |
| 48 | g15904.t3 | ProSiteProfiles | PS50004 | C2 domain profile. | 1898 | 1990 | 17.028 |
| 51 | g15904.t3 | ProSiteProfiles | PS51258 | Munc13-homology domain 1 (MHD1) profile. | 2311 | 2454 | 28.731 |
| 50 | g15904.t3 | ProSiteProfiles | PS51259 | Munc13-homology domain 2 (MHD2) profile. | 2557 | 2719 | 27.385 |
| 49 | g15904.t3 | ProSiteProfiles | PS50004 | C2 domain profile. | 2801 | 2896 | 14.467 |
| 29 | g15904.t3 | SMART | SM00109 | c1_12 | 1771 | 1820 | 3.2E-17 |
| 27 | g15904.t3 | SMART | SM00239 | C2_3c | 1898 | 2005 | 1.1E-20 |
| 26 | g15904.t3 | SMART | SM01145 | DUF1041_2a | 2213 | 2320 | 1.9E-39 |
| 28 | g15904.t3 | SMART | SM00239 | C2_3c | 2801 | 2911 | 6.2E-14 |
| 10 | g15904.t3 | SUPERFAMILY | SSF57889 | Cysteine-rich domain | 1760 | 1820 | 1.79E-15 |
| 12 | g15904.t3 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 1899 | 2038 | 3.27E-31 |
| 11 | g15904.t3 | SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2777 | 2917 | 5.21E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005509 | calcium ion binding | MF |
| GO:0007268 | chemical synaptic transmission | BP |
| GO:0035556 | intracellular signal transduction | BP |
| GO:0019992 | diacylglycerol binding | MF |
| GO:0005543 | phospholipid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K15293 (protein unc-13 A/B/C)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed