Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable transaldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15934 g15934.t10 TSS g15934.t10 7470532 7470532
chr_4 g15934 g15934.t10 isoform g15934.t10 7470541 7473302
chr_4 g15934 g15934.t10 exon g15934.t10.exon1 7470541 7470643
chr_4 g15934 g15934.t10 cds g15934.t10.CDS1 7470541 7470643
chr_4 g15934 g15934.t10 exon g15934.t10.exon2 7471515 7471638
chr_4 g15934 g15934.t10 cds g15934.t10.CDS2 7471515 7471638
chr_4 g15934 g15934.t10 exon g15934.t10.exon3 7472365 7472615
chr_4 g15934 g15934.t10 cds g15934.t10.CDS3 7472365 7472615
chr_4 g15934 g15934.t10 exon g15934.t10.exon4 7472704 7472743
chr_4 g15934 g15934.t10 cds g15934.t10.CDS4 7472704 7472743
chr_4 g15934 g15934.t10 exon g15934.t10.exon5 7472898 7473302
chr_4 g15934 g15934.t10 cds g15934.t10.CDS5 7472898 7472910
chr_4 g15934 g15934.t10 TTS g15934.t10 7473418 7473418

Sequences

>g15934.t10 Gene=g15934 Length=923
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCAATCAAAGAGTTTAAA
CCAACAGACGCAACAACCAACCCTTCGCTTATATTATCTGCAGCAAAAATTGAAAAATAC
TCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTTGAAAATGCAAGCACAATTGAAGAA
CAAGTAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCTCAAGGTG
ATTCCCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGATGCAAGC
ATTAAAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTAAAAAAGATCGA
ATTTTGATCAAACTTGCATCAACATGGGAAGGAATTGAAGCTGCAAGAATTCTTGAAAAC
CATTTGTTGGAAGAATTTTGGATTGGTATAAGAAAAATAACCCTTCAGTAACTTATGCTG
GACCAACTGACCCAGGTGTCATTTCAGTCACAAACATTTACAATTACTACAAGAAATTCG
ATTACAAAACTACCGTCATGGGTGCTTCATTCCGCAATGTTGGTGAAATCAGAGAACTTG
CTGGTTGTGATTTGCTCACAATTAGTCCAGCATTGTTAAAAGAACTTGATTCTTCCAATG
AGAAAATATCCATCAAACTTACACCAGAAAGTGCAAAAGATTCAAAACTTGCTCGTATTT
CAATGAATGAACAAGTTTTCCGTTGGATGTTAAATGAAGATCAAATGGCAACAGAGAAAT
TGAGTGAAGGAATCAGAAATTTTGCTGCTGATTCAGTCAAATTGGAAAATTTGTTGAGAG
AAAAAATTGAAGCAAGAAAGTAA

>g15934.t10 Gene=g15934 Length=176
MSIEANQPNKKVTMSVLDQLKEVTTIVADTGDFEAIKEFKPTDATTNPSLILSAAKIEKY
SKVIDQAVDYALENASTIEEQVAEAADQLFVLFGHEILKVIPGRVSTEVDARLSFDRDAS
IKKAIKFIEAYEALGIKKDRILIKLASTWEGIEAARILENHLLEEFWIGIRKITLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15934.t10 Gene3D G3DSA:3.20.20.70 Aldolase class I 9 164 6.0E-61
2 g15934.t10 PANTHER PTHR10683:SF18 TRANSALDOLASE 15 161 6.2E-62
3 g15934.t10 PANTHER PTHR10683 TRANSALDOLASE 15 161 6.2E-62
1 g15934.t10 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 26 160 5.8E-38
5 g15934.t10 ProSitePatterns PS01054 Transaldolase signature 1. 43 51 -
6 g15934.t10 ProSitePatterns PS00958 Transaldolase active site. 141 158 -
4 g15934.t10 SUPERFAMILY SSF51569 Aldolase 14 160 2.56E-48

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0004801 transaldolase activity MF
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed