Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable transaldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15934 g15934.t14 TSS g15934.t14 7470532 7470532
chr_4 g15934 g15934.t14 isoform g15934.t14 7470541 7473302
chr_4 g15934 g15934.t14 exon g15934.t14.exon1 7470541 7470643
chr_4 g15934 g15934.t14 exon g15934.t14.exon2 7471515 7471642
chr_4 g15934 g15934.t14 exon g15934.t14.exon3 7472365 7472545
chr_4 g15934 g15934.t14 cds g15934.t14.CDS1 7472529 7472545
chr_4 g15934 g15934.t14 exon g15934.t14.exon4 7472656 7472743
chr_4 g15934 g15934.t14 cds g15934.t14.CDS2 7472656 7472743
chr_4 g15934 g15934.t14 exon g15934.t14.exon5 7472898 7473302
chr_4 g15934 g15934.t14 cds g15934.t14.CDS3 7472898 7473302
chr_4 g15934 g15934.t14 TTS g15934.t14 7473418 7473418

Sequences

>g15934.t14 Gene=g15934 Length=905
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCAATCAAAGAGTTTAAA
CCAACAGACGCAACAACCAACCCTTCGCTTATATTATCTGCAGCAAAAATTGAAAAATAC
TCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTTGAAAATGCAAGGTCACACAATTGA
AGAACAAGTAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCTCAA
GGTGATTCCCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGATGC
AAGCATTAAAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTTTTTGCAC
AAGCTGTTGCATGTGCTGAGGCCAAAGTTACATTGATCTCACCATTTGTTGGAAGAATTT
TGGATTGGTATAAGAAAAATAACCCTTCAGTAACTTATGCTGGACCAACTGACCCAGGTG
TCATTTCAGTCACAAACATTTACAATTACTACAAGAAATTCGATTACAAAACTACCGTCA
TGGGTGCTTCATTCCGCAATGTTGGTGAAATCAGAGAACTTGCTGGTTGTGATTTGCTCA
CAATTAGTCCAGCATTGTTAAAAGAACTTGATTCTTCCAATGAGAAAATATCCATCAAAC
TTACACCAGAAAGTGCAAAAGATTCAAAACTTGCTCGTATTTCAATGAATGAACAAGTTT
TCCGTTGGATGTTAAATGAAGATCAAATGGCAACAGAGAAATTGAGTGAAGGAATCAGAA
ATTTTGCTGCTGATTCAGTCAAATTGGAAAATTTGTTGAGAGAAAAAATTGAAGCAAGAA
AGTAA

>g15934.t14 Gene=g15934 Length=169
MKHLEFFAQAVACAEAKVTLISPFVGRILDWYKKNNPSVTYAGPTDPGVISVTNIYNYYK
KFDYKTTVMGASFRNVGEIRELAGCDLLTISPALLKELDSSNEKISIKLTPESAKDSKLA
RISMNEQVFRWMLNEDQMATEKLSEGIRNFAADSVKLENLLREKIEARK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g15934.t14 Gene3D G3DSA:3.20.20.70 Aldolase class I 4 169 0
2 g15934.t14 PANTHER PTHR10683:SF18 TRANSALDOLASE 7 165 0
3 g15934.t14 PANTHER PTHR10683 TRANSALDOLASE 7 165 0
1 g15934.t14 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 7 160 0
4 g15934.t14 SUPERFAMILY SSF51569 Aldolase 7 165 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0004801 transaldolase activity MF
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed