Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable transaldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15934 g15934.t16 TSS g15934.t16 7470532 7470532
chr_4 g15934 g15934.t16 isoform g15934.t16 7470541 7473302
chr_4 g15934 g15934.t16 exon g15934.t16.exon1 7470541 7470643
chr_4 g15934 g15934.t16 exon g15934.t16.exon2 7471515 7471642
chr_4 g15934 g15934.t16 cds g15934.t16.CDS1 7471632 7471642
chr_4 g15934 g15934.t16 exon g15934.t16.exon3 7472362 7472743
chr_4 g15934 g15934.t16 cds g15934.t16.CDS2 7472362 7472743
chr_4 g15934 g15934.t16 exon g15934.t16.exon4 7472898 7473302
chr_4 g15934 g15934.t16 cds g15934.t16.CDS3 7472898 7473302
chr_4 g15934 g15934.t16 TTS g15934.t16 7473418 7473418

Sequences

>g15934.t16 Gene=g15934 Length=1018
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCAATCAAAGAGTTTAAA
CCAACAGACGCAACAACCAACCCTTCGCTTATATTATCTGCAGCAAAAATTGAAAAATAC
TCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTTGAAAATGCAAGGTCAAAGCACAAT
TGAAGAACAAGTAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCT
CAAGGTGATTCCCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGA
TGCAAGCATTAAAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTAAAAA
AGATCGAATTTTGATCAAACTTGCATCAACATGGGAAGGAATTGAAGCTGCAAGAATTCT
TGAAAGTGAACATGGAATTCACTGTAATCTCACATTGTTGTTTAGTTTTGCACAAGCTGT
TGCATGTGCTGAGGCCAAAGTTACATTGATCTCACCATTTGTTGGAAGAATTTTGGATTG
GTATAAGAAAAATAACCCTTCAGTAACTTATGCTGGACCAACTGACCCAGGTGTCATTTC
AGTCACAAACATTTACAATTACTACAAGAAATTCGATTACAAAACTACCGTCATGGGTGC
TTCATTCCGCAATGTTGGTGAAATCAGAGAACTTGCTGGTTGTGATTTGCTCACAATTAG
TCCAGCATTGTTAAAAGAACTTGATTCTTCCAATGAGAAAATATCCATCAAACTTACACC
AGAAAGTGCAAAAGATTCAAAACTTGCTCGTATTTCAATGAATGAACAAGTTTTCCGTTG
GATGTTAAATGAAGATCAAATGGCAACAGAGAAATTGAGTGAAGGAATCAGAAATTTTGC
TGCTGATTCAGTCAAATTGGAAAATTTGTTGAGAGAAAAAATTGAAGCAAGAAAGTAA

>g15934.t16 Gene=g15934 Length=265
MQGQSTIEEQVAEAADQLFVLFGHEILKVIPGRVSTEVDARLSFDRDASIKKAIKFIEAY
EALGIKKDRILIKLASTWEGIEAARILESEHGIHCNLTLLFSFAQAVACAEAKVTLISPF
VGRILDWYKKNNPSVTYAGPTDPGVISVTNIYNYYKKFDYKTTVMGASFRNVGEIRELAG
CDLLTISPALLKELDSSNEKISIKLTPESAKDSKLARISMNEQVFRWMLNEDQMATEKLS
EGIRNFAADSVKLENLLREKIEARK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g15934.t16 CDD cd00957 Transaldolase_TalAB 6 257 2.51428E-150
6 g15934.t16 Coils Coil Coil 261 265 -
5 g15934.t16 Gene3D G3DSA:3.20.20.70 Aldolase class I 2 265 1.0E-113
2 g15934.t16 PANTHER PTHR10683:SF18 TRANSALDOLASE 6 261 3.8E-126
3 g15934.t16 PANTHER PTHR10683 TRANSALDOLASE 6 261 3.8E-126
1 g15934.t16 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 8 256 1.9E-84
8 g15934.t16 ProSitePatterns PS00958 Transaldolase active site. 70 87 -
4 g15934.t16 SUPERFAMILY SSF51569 Aldolase 6 261 9.11E-95
9 g15934.t16 TIGRFAM TIGR00874 talAB: transaldolase 5 261 6.2E-123

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0004801 transaldolase activity MF
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed