Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable transaldolase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g15934 g15934.t20 TSS g15934.t20 7470532 7470532
chr_4 g15934 g15934.t20 isoform g15934.t20 7470541 7473302
chr_4 g15934 g15934.t20 exon g15934.t20.exon1 7470541 7470643
chr_4 g15934 g15934.t20 exon g15934.t20.exon2 7471515 7471642
chr_4 g15934 g15934.t20 cds g15934.t20.CDS1 7471632 7471642
chr_4 g15934 g15934.t20 exon g15934.t20.exon3 7472365 7472654
chr_4 g15934 g15934.t20 cds g15934.t20.CDS2 7472365 7472654
chr_4 g15934 g15934.t20 exon g15934.t20.exon4 7472898 7473302
chr_4 g15934 g15934.t20 cds g15934.t20.CDS3 7472898 7472929
chr_4 g15934 g15934.t20 TTS g15934.t20 7473418 7473418

Sequences

>g15934.t20 Gene=g15934 Length=926
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCAATCAAAGAGTTTAAA
CCAACAGACGCAACAACCAACCCTTCGCTTATATTATCTGCAGCAAAAATTGAAAAATAC
TCAAAAGTCATCGATCAAGCTGTTGACTATGCTCTTGAAAATGCAAGGTCACACAATTGA
AGAACAAGTAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCTCAA
GGTGATTCCCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGATGC
AAGCATTAAAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTAAAAAAGA
TCGAATTTTGATCAAACTTGCATCAACATGGGAAGGAATTGAAGCTGCAAGAATTCTTGA
AAGTGAACATGGAATTCACTGTAATCTCACATTGTTGTTTAAACCCTTCAGTAACTTATG
CTGGACCAACTGACCCAGGTGTCATTTCAGTCACAAACATTTACAATTACTACAAGAAAT
TCGATTACAAAACTACCGTCATGGGTGCTTCATTCCGCAATGTTGGTGAAATCAGAGAAC
TTGCTGGTTGTGATTTGCTCACAATTAGTCCAGCATTGTTAAAAGAACTTGATTCTTCCA
ATGAGAAAATATCCATCAAACTTACACCAGAAAGTGCAAAAGATTCAAAACTTGCTCGTA
TTTCAATGAATGAACAAGTTTTCCGTTGGATGTTAAATGAAGATCAAATGGCAACAGAGA
AATTGAGTGAAGGAATCAGAAATTTTGCTGCTGATTCAGTCAAATTGGAAAATTTGTTGA
GAGAAAAAATTGAAGCAAGAAAGTAA

>g15934.t20 Gene=g15934 Length=110
MQGHTIEEQVAEAADQLFVLFGHEILKVIPGRVSTEVDARLSFDRDASIKKAIKFIEAYE
ALGIKKDRILIKLASTWEGIEAARILESEHGIHCNLTLLFKPFSNLCWTN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g15934.t20 Gene3D G3DSA:3.20.20.70 Aldolase class I 1 103 5.5E-41
2 g15934.t20 PANTHER PTHR10683:SF18 TRANSALDOLASE 5 101 3.6E-42
3 g15934.t20 PANTHER PTHR10683 TRANSALDOLASE 5 101 3.6E-42
1 g15934.t20 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 7 102 3.2E-31
5 g15934.t20 ProSitePatterns PS00958 Transaldolase active site. 69 86 -
4 g15934.t20 SUPERFAMILY SSF51569 Aldolase 4 102 3.91E-36

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006098 pentose-phosphate shunt BP
GO:0004801 transaldolase activity MF
GO:0005975 carbohydrate metabolic process BP
GO:0003824 catalytic activity MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed