General information for g15934.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable transaldolase.
Parent gene
- The parent gene g15934 is located on chr_4: 7472545..7477457 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g15934 | g15934.t29 | TSS | g15934.t29 | 7470532 | 7470532 |
| chr_4 | g15934 | g15934.t29 | isoform | g15934.t29 | 7470541 | 7473302 |
| chr_4 | g15934 | g15934.t29 | exon | g15934.t29.exon1 | 7470541 | 7470643 |
| chr_4 | g15934 | g15934.t29 | exon | g15934.t29.exon2 | 7472365 | 7472743 |
| chr_4 | g15934 | g15934.t29 | exon | g15934.t29.exon3 | 7472898 | 7473302 |
| chr_4 | g15934 | g15934.t29 | cds | g15934.t29.CDS1 | 7472997 | 7473302 |
| chr_4 | g15934 | g15934.t29 | TTS | g15934.t29 | 7473418 | 7473418 |
Sequences
>g15934.t29 Gene=g15934 Length=887
ATGAGCATTGAAGCGAATCAGCCAAATAAAAAAGTAACAATGTCAGTTTTGGATCAATTG
AAAGAAGTCACAACAATTGTTGCTGATACTGGTGATTTTGAAGCACAATTGAAGAACAAG
TAGCAGAAGCAGCTGATCAACTCTTTGTTCTCTTTGGTCATGAAATTCTCAAGGTGATTC
CCGGTCGCGTTTCAACTGAAGTTGATGCACGTCTCTCATTTGATCGCGATGCAAGCATTA
AAAAGGCAATAAAATTTATTGAAGCTTATGAAGCACTTGGAATTAAAAAAGATCGAATTT
TGATCAAACTTGCATCAACATGGGAAGGAATTGAAGCTGCAAGAATTCTTGAAAGTGAAC
ATGGAATTCACTGTAATCTCACATTGTTGTTTAGTTTTGCACAAGCTGTTGCATGTGCTG
AGGCCAAAGTTACATTGATCTCACCATTTGTTGGAAGAATTTTGGATTGGTATAAGAAAA
ATAACCCTTCAGTAACTTATGCTGGACCAACTGACCCAGGTGTCATTTCAGTCACAAACA
TTTACAATTACTACAAGAAATTCGATTACAAAACTACCGTCATGGGTGCTTCATTCCGCA
ATGTTGGTGAAATCAGAGAACTTGCTGGTTGTGATTTGCTCACAATTAGTCCAGCATTGT
TAAAAGAACTTGATTCTTCCAATGAGAAAATATCCATCAAACTTACACCAGAAAGTGCAA
AAGATTCAAAACTTGCTCGTATTTCAATGAATGAACAAGTTTTCCGTTGGATGTTAAATG
AAGATCAAATGGCAACAGAGAAATTGAGTGAAGGAATCAGAAATTTTGCTGCTGATTCAG
TCAAATTGGAAAATTTGTTGAGAGAAAAAATTGAAGCAAGAAAGTAA
>g15934.t29 Gene=g15934 Length=101
MGASFRNVGEIRELAGCDLLTISPALLKELDSSNEKISIKLTPESAKDSKLARISMNEQV
FRWMLNEDQMATEKLSEGIRNFAADSVKLENLLREKIEARK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g15934.t29 | Coils | Coil | Coil | 89 | 101 | - |
| 5 | g15934.t29 | Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 1 | 101 | 2.4E-34 |
| 2 | g15934.t29 | PANTHER | PTHR10683:SF18 | TRANSALDOLASE | 1 | 98 | 2.1E-35 |
| 3 | g15934.t29 | PANTHER | PTHR10683 | TRANSALDOLASE | 1 | 98 | 2.1E-35 |
| 1 | g15934.t29 | Pfam | PF00923 | Transaldolase/Fructose-6-phosphate aldolase | 1 | 92 | 1.5E-20 |
| 4 | g15934.t29 | SUPERFAMILY | SSF51569 | Aldolase | 1 | 97 | 7.2E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006098 | pentose-phosphate shunt | BP |
| GO:0004801 | transaldolase activity | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
