General information for g16079.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Anion exchange protein 2.
Parent gene
- The parent gene g16079 is located on chr_4: 8061218..8072373 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16079 | g16079.t1 | isoform | g16079.t1 | 8061218 | 8072373 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon1 | 8061218 | 8061292 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS1 | 8061218 | 8061292 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon2 | 8061511 | 8061739 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS2 | 8061511 | 8061739 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon3 | 8061827 | 8061926 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS3 | 8061827 | 8061926 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon4 | 8061985 | 8062079 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS4 | 8061985 | 8062079 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon5 | 8062145 | 8063138 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS5 | 8062145 | 8063138 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon6 | 8063198 | 8063454 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS6 | 8063198 | 8063454 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon7 | 8063516 | 8064003 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS7 | 8063516 | 8064003 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon8 | 8069482 | 8070043 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS8 | 8069482 | 8070043 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon9 | 8070141 | 8070256 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS9 | 8070141 | 8070256 |
| chr_4 | g16079 | g16079.t1 | exon | g16079.t1.exon10 | 8072161 | 8072373 |
| chr_4 | g16079 | g16079.t1 | cds | g16079.t1.CDS10 | 8072161 | 8072373 |
| chr_4 | g16079 | g16079.t1 | TSS | g16079.t1 | NA | NA |
| chr_4 | g16079 | g16079.t1 | TTS | g16079.t1 | NA | NA |
Sequences
>g16079.t1 Gene=g16079 Length=3129
ATGAAGCGACAATCATCGACTGAAAGCAATCGCAGTGCAAGAGAAAATAGAGAAATATTT
CCAAATGATAAACGAATAAGTTCAAGTGGATCGGAATCAATTCTCGATGGAACTGATCAT
ATTTCGCGTCCTTCAAATAGCTCCTCATATGCTGATTTCACAGAGTCTGATGACGATGAT
ATTTTAACTTCAGAAAGATATGGCGATGATGAGGAAATCTCAAAAAGATCCAAATCAATT
CTTAGTAAATTGATAGAAGAAGAAACAAAAAAGGATACCGAAGAAGATAGCGATGAGGAT
GCAACGGAAAAAAAATTACAAAGTGATAAAAAAAGCACAAAAAGTAACTGTAAGCAATCA
CCATCACGACTCAATTCCGACCAAACACCAATTCAGTTACCAAAAGTTCGACATAAATCC
CATCATCATTCTTCCAGCAAACAGCATCGTAGCAATAGCGTAGCATTAAATGTCACTAAG
AAACGACATTACGATCACAAACCACATGACGCATTCGTACAACTCGATGAACTGCGGTCT
GCTGGTGATGAATTTGAATGGCGTGAAACAGCGCGATGGATTAAATATGAAGAAAATTTA
GAAGAAGGCAGTGGACGTTGGGGAAGACCACACGTGCCAACTTTATCATTTCAATCATTG
CTAAGTCTTCGACATTGCCTTGAAACGGGTGTGGTGCTTATGGACTTGGAAGAAAAAGAT
TTACCTGGTACAGCTCATCGAATAGTTGAGCAAATGGTAAATGAAGATCTTATACATCGT
GATGACAAGGTACAAATTATGAGGGTATTATTGCAAAGGCATCGACATGTAGGAAGCTTT
GGTGGTTTTCATTTTGGAAGAAGAAAAAATAGCAGCTTTAATAGTCTTCAAAACATTAAC
CAAATTGCATCAGACAAGCTTCAACCAAATGGCCTCGATGTAAAAATCGATATGAAAGAT
GAAACGCCGCACACAATTCATGATCAACAGCATGATTCAATTCTTAAAAGAATACCAGGT
GATTCAGAAGCCGTTTCAGTTCACGTCGGTGCTGTTGAATTTCTTGAACAACCAACAATT
GCTTTCGTTCGTCTCGCTGAAGGCACAATTATGCCAGGAGTTATTGAAGCATTACTGCCA
ATTCGATTTTTCTTCATACTGCTTGGTCCAAAAACATGTGATTTAGATTTTCATGAAATT
GGCAGATCGATTGCGACACTCATGTCAAACCGGCACTTTCAAACAATTGCTTATAAGGCT
GACGATAGACGTGAGTTGCTGACAGCAATCAATGAATTTCTAGATGACTCGATTGTGTTA
CCAGCTGGAAAATGGGATCGTGAACATTTACTACCCTTTGAAGAGCTAAAAGCAAAAAGT
GAAATGATTCGATCAAGAAAGCGAAAAGTTTTGGCAGAAAAATTAAAAGCAAAAACCATT
GGTGAAGATAAAAAACTTTTATCATCAGATGGAAGTTCATCCGATGATCCATTGCATAAG
ACTGGTCGATTATGGGGTGGAATGATTAATGATATTAAACGAAGATTTCCTATGTATAAA
AGTGACATACTTGATGGCCTAAATTCTGAAACTTTTGCTGCAACTTTATTTTTATATTTT
GCTGGACTTGCTACTGCCGTAACGTTTGGCGGTCTAATAGATGAAAAGACAACACGTTTA
ATAGGCATATCAGAGACACTTGCATCATCATGTTTAGTTGGAATGATTTTTCATGCATTT
GCATCACAACCACTTGTATTTGTTGGCACAACTGGACCATTAATACTTTTCGATGAAGCA
CTTTATCAATTTTGTGAAGAAATGTCCTTTAATTTTCTCACAGTTCGCGTTTACATTGGC
ATTTGGCTGACAATCATCGCATTAACAATTTCAGCATTTGAAGGAAGCGTCTACGTGCGT
CTTTTTACGCGTTTCACTCAAGAAATTTTCTCAGCTCTTATCACATTGATTTACATAGTC
GAGACAGTTTTGACCTTGGTTAACAATTATCAACGTCACCCATTATTACTTGAATACAAT
TCACAAAGTAGCACAGACACGACAACAACAATGATGCAATTGCAAACACTCGACCGAATG
GGACCAATTAATCGACCAAATACCGCTCTTTTCAGTACTTTACTTACCCTCGGAACTTTT
TGCCTCGCATATTTTCTTAAAGTCTTTCGCAATTCGAAATTTCTTGGTCGAAATACACGA
AGAGCTTTGGGCGATTTTGGTGTCCCAATTGCAATCACAACATTTGTTCTTGTTGATTAT
TTTGTACCACAAGTATATACTGATAAATTAAATGTGCCAGATGGAATTTCACCAAGTGAT
CCAACAGAAAGAGAATGGAAAATTCCATTTATGCCTATTCCTTTATGGATTCCATTTGCA
GCAATTGTGCCTGCATTTTTAGCATTTATTTTGATCTTCATGGAAACTGAAATTTCAGAA
CTAATTGTTGGCAAGGCAGAGCGTGGTATGAAAAAAGGCAATGGATTGCATTGGGACATT
GTGTTGCTTTGTTTGTGTAATACTGTTTGCGGTATTTTTGGTATGCCATGGCATTGCGCG
GCAACAGTTCGTTCTGTCACTCATGTTTCAGCTGTAACTATTATGTCAACTAATCATGCA
CCTGGTGATACACCAAAAATAGTTGACATAAAAGAGCAAAGATTGTCTGGATTTTTTGTA
TCTCTTATGATTGGATTGTCAATTTTTGCATCACCACTACTACAACAAGTTCCAATGGCA
GTATTATTTGGTGTATTCTTGTATATGGGTATTTGTTCAATGTTTGGAGTACAATTTTTT
GAAAGATTGCGTTTATTTTTCATGCCGGTAAAGCATCATCCACAAGTGCCATTCGTCCGA
CGTGTTCGTACATGGAAGATGCATTTGTTCACATTAATTCAAGTGCTGGCGTTGTCACTT
TTATGGATTATTAAGTCATCACGTTTCTCCCTCGCATTTCCATTCTTTTTAATTATGATG
GTGCCATTGAGAAAAATCTTGAAGAAATTTTTCACTGTAACTGAATTGAGAGCGCTTGAT
TGCATTCAACCAAGTGATGGAACAGAAGCAGAACCAGATTTTTATGAGCAGGCACCATTG
CCTGCGTAA
>g16079.t1 Gene=g16079 Length=1042
MKRQSSTESNRSARENREIFPNDKRISSSGSESILDGTDHISRPSNSSSYADFTESDDDD
ILTSERYGDDEEISKRSKSILSKLIEEETKKDTEEDSDEDATEKKLQSDKKSTKSNCKQS
PSRLNSDQTPIQLPKVRHKSHHHSSSKQHRSNSVALNVTKKRHYDHKPHDAFVQLDELRS
AGDEFEWRETARWIKYEENLEEGSGRWGRPHVPTLSFQSLLSLRHCLETGVVLMDLEEKD
LPGTAHRIVEQMVNEDLIHRDDKVQIMRVLLQRHRHVGSFGGFHFGRRKNSSFNSLQNIN
QIASDKLQPNGLDVKIDMKDETPHTIHDQQHDSILKRIPGDSEAVSVHVGAVEFLEQPTI
AFVRLAEGTIMPGVIEALLPIRFFFILLGPKTCDLDFHEIGRSIATLMSNRHFQTIAYKA
DDRRELLTAINEFLDDSIVLPAGKWDREHLLPFEELKAKSEMIRSRKRKVLAEKLKAKTI
GEDKKLLSSDGSSSDDPLHKTGRLWGGMINDIKRRFPMYKSDILDGLNSETFAATLFLYF
AGLATAVTFGGLIDEKTTRLIGISETLASSCLVGMIFHAFASQPLVFVGTTGPLILFDEA
LYQFCEEMSFNFLTVRVYIGIWLTIIALTISAFEGSVYVRLFTRFTQEIFSALITLIYIV
ETVLTLVNNYQRHPLLLEYNSQSSTDTTTTMMQLQTLDRMGPINRPNTALFSTLLTLGTF
CLAYFLKVFRNSKFLGRNTRRALGDFGVPIAITTFVLVDYFVPQVYTDKLNVPDGISPSD
PTEREWKIPFMPIPLWIPFAAIVPAFLAFILIFMETEISELIVGKAERGMKKGNGLHWDI
VLLCLCNTVCGIFGMPWHCAATVRSVTHVSAVTIMSTNHAPGDTPKIVDIKEQRLSGFFV
SLMIGLSIFASPLLQQVPMAVLFGVFLYMGICSMFGVQFFERLRLFFMPVKHHPQVPFVR
RVRTWKMHLFTLIQVLALSLLWIIKSSRFSLAFPFFLIMMVPLRKILKKFFTVTELRALD
CIQPSDGTEAEPDFYEQAPLPA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 22 | g16079.t1 | Gene3D | G3DSA:3.40.930.10 | - | 165 | 476 | 1.5E-104 |
| 21 | g16079.t1 | Gene3D | G3DSA:1.10.287.570 | Helical hairpin bin | 514 | 556 | 3.7E-16 |
| 61 | g16079.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 157 | - |
| 63 | g16079.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 58 | g16079.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 52 | - |
| 59 | g16079.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 90 | - |
| 62 | g16079.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 112 | - |
| 60 | g16079.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 133 | - |
| 3 | g16079.t1 | PANTHER | PTHR11453:SF47 | ANION EXCHANGE PROTEIN | 90 | 1030 | 0.0 |
| 4 | g16079.t1 | PANTHER | PTHR11453 | ANION EXCHANGE PROTEIN | 90 | 1030 | 0.0 |
| 18 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 266 | 271 | 3.4E-10 |
| 10 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 378 | 390 | 4.6E-26 |
| 7 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 521 | 530 | 4.6E-26 |
| 19 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 530 | 537 | 3.4E-10 |
| 13 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 540 | 546 | 3.4E-10 |
| 11 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 546 | 557 | 4.6E-26 |
| 15 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 563 | 570 | 3.4E-10 |
| 6 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 636 | 648 | 4.6E-26 |
| 17 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 707 | 717 | 3.4E-10 |
| 12 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 720 | 729 | 3.4E-10 |
| 8 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 745 | 754 | 4.6E-26 |
| 9 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 810 | 819 | 4.6E-26 |
| 5 | g16079.t1 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 824 | 837 | 4.6E-26 |
| 14 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 869 | 877 | 3.4E-10 |
| 16 | g16079.t1 | PRINTS | PR00165 | Anion exchanger family signature | 1026 | 1036 | 3.4E-10 |
| 1 | g16079.t1 | Pfam | PF07565 | Band 3 cytoplasmic domain | 200 | 448 | 1.0E-88 |
| 2 | g16079.t1 | Pfam | PF00955 | HCO3- transporter family | 499 | 973 | 8.5E-181 |
| 34 | g16079.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 531 | - |
| 42 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 532 | 553 | - |
| 24 | g16079.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 554 | 559 | - |
| 35 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 560 | 581 | - |
| 31 | g16079.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 582 | 616 | - |
| 40 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 617 | 637 | - |
| 26 | g16079.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 638 | 648 | - |
| 43 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 649 | 667 | - |
| 32 | g16079.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 668 | 708 | - |
| 37 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 709 | 730 | - |
| 25 | g16079.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 731 | 741 | - |
| 39 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 742 | 762 | - |
| 29 | g16079.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 763 | 792 | - |
| 36 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 793 | 813 | - |
| 23 | g16079.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 814 | 894 | - |
| 38 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 895 | 914 | - |
| 30 | g16079.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 915 | 919 | - |
| 44 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 920 | 940 | - |
| 28 | g16079.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 941 | 966 | - |
| 45 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 967 | 984 | - |
| 33 | g16079.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 985 | 989 | - |
| 41 | g16079.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 990 | 1007 | - |
| 27 | g16079.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1008 | 1042 | - |
| 20 | g16079.t1 | SUPERFAMILY | SSF55804 | Phoshotransferase/anion transport protein | 171 | 466 | 1.26E-80 |
| 64 | g16079.t1 | TIGRFAM | TIGR00834 | ae: anion exchange protein | 172 | 1029 | 1.3E-304 |
| 46 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 531 | 553 | - |
| 48 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 560 | 582 | - |
| 51 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 620 | 642 | - |
| 54 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 649 | 671 | - |
| 49 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 707 | 729 | - |
| 52 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 742 | 764 | - |
| 50 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 792 | 814 | - |
| 53 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 835 | 857 | - |
| 47 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 895 | 914 | - |
| 57 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 921 | 940 | - |
| 56 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 967 | 984 | - |
| 55 | g16079.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 989 | 1003 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0006820 | anion transport | BP |
| GO:0005452 | inorganic anion exchanger activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0008509 | anion transmembrane transporter activity | MF |
KEGG
Orthology
- This transcript has been annotated with K13855 (solute carrier family 4 (anion exchanger), member 2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed