General information for g1632.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g1632 is located on chr_3: 12235604..12236410 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1632 | g1632.t7 | TSS | g1632.t7 | 12234582 | 12234582 |
| chr_3 | g1632 | g1632.t7 | isoform | g1632.t7 | 12235604 | 12236410 |
| chr_3 | g1632 | g1632.t7 | exon | g1632.t7.exon1 | 12235604 | 12235822 |
| chr_3 | g1632 | g1632.t7 | cds | g1632.t7.CDS1 | 12235800 | 12235822 |
| chr_3 | g1632 | g1632.t7 | exon | g1632.t7.exon2 | 12236134 | 12236410 |
| chr_3 | g1632 | g1632.t7 | cds | g1632.t7.CDS2 | 12236134 | 12236410 |
| chr_3 | g1632 | g1632.t7 | TTS | g1632.t7 | 12236500 | 12236500 |
Sequences
>g1632.t7 Gene=g1632 Length=496
TTGGATTCTTTATTTGATTCTTTTTGTTCTGCTGCCAATCAATGCACCATTAGAATATTG
GGATGATACTGTGCAAGCTGCAATCTTTGTTGCTTTTTCATTGAGATATTTAATTGTCAT
CAATTTCGCTTGGCTCGTTAATTCAGCTCATTTCATTTGGGCTTTGGATAAAAATCACAA
ACAATCTGACTCAAATATGGTCTTTATTGTCACTAAAAGTTACTGGCCTCAATATCACTA
TTTAATTCCATACGACTATCAAACAGGAGAATTTGGCAATTATGGAGAAGGAACATCAAC
AAGTTTAATTAGAATTTTTGCAGCAATGGGGTGGGCAACAGAGCTTAAAACAGTGACATC
AGATGCAGTTAGAAAAGGACTCGCAATGGCTGTTGATACTGGAAGAGAAATTGTTGATTG
CATAAAAGAGGCAAATGATGAAGAATTGCTAAAATTGCCACCTGATCATTATTTGAAAAG
AGAAAATTTGAGTTAA
>g1632.t7 Gene=g1632 Length=99
MVFIVTKSYWPQYHYLIPYDYQTGEFGNYGEGTSTSLIRIFAAMGWATELKTVTSDAVRK
GLAMAVDTGREIVDCIKEANDEELLKLPPDHYLKRENLS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g1632.t7 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 1 | 87 | 0 |
| g1632.t7 | PANTHER | PTHR11351:SF26 | AGAP003050-PA | 1 | 87 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed