General information for g16323.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Vacuolar protein sorting-associated protein 18-like protein.
Parent gene
- The parent gene g16323 is located on chr_4: 9078380..9081702 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16323 | g16323.t2 | TSS | g16323.t2 | 9078315 | 9078315 |
| chr_4 | g16323 | g16323.t2 | isoform | g16323.t2 | 9078380 | 9079245 |
| chr_4 | g16323 | g16323.t2 | exon | g16323.t2.exon1 | 9078380 | 9078811 |
| chr_4 | g16323 | g16323.t2 | cds | g16323.t2.CDS1 | 9078380 | 9078811 |
| chr_4 | g16323 | g16323.t2 | exon | g16323.t2.exon2 | 9079016 | 9079171 |
| chr_4 | g16323 | g16323.t2 | cds | g16323.t2.CDS2 | 9079016 | 9079171 |
| chr_4 | g16323 | g16323.t2 | exon | g16323.t2.exon3 | 9079229 | 9079245 |
| chr_4 | g16323 | g16323.t2 | cds | g16323.t2.CDS3 | 9079229 | 9079243 |
| chr_4 | g16323 | g16323.t2 | TTS | g16323.t2 | NA | NA |
Sequences
>g16323.t2 Gene=g16323 Length=605
ATGGCATTCAATTTTGAGCAATTTAACAGTAATTCTTTAGCACAACGTGAATCAAATTCT
CGAGCAACAGAAGAAACTCAAATTGTGCCATCAGGCTATGTTCAAATCAAGAAAAATGAC
GAAAAACAAATTTTTCAAAAATCAAAAATGAATTTGAATCTGCCTGCAAATATAAATTTC
TTAAGTGTTGCAAATGATTGGCTTGTTGTGATAATGTCAAATCAAATTTTATTCAGATTA
AATTTAAAGCAACCAGACAAGCAGTATGAAGTTTTTCTTGAGAAATTCACAACTGGACAA
AGAATTTCTAAAATGTTTATTGATCCAACTGGAAGTCATCTTTTGATATCACTTGTTCCT
AAATCATCTGGTTATACTTGTGAATTGATGTATTTGAATAAAAATAGTAATAAACCAAAG
ATTCTTTCTAAGTTCCGAGATCATGAAATAACAGCAGTTGGATTTAATTATGAAAACACA
TCAGACATCAGTACTGGAAATATTCTCTTAGGAACTTCAAAAGGGCTTGTTTTTGAAGCT
GATATTGGATGTGATGGTGATAGATTAATTCAGAATAATTGGAAGCAGGTCTTTGACATA
GGACG
>g16323.t2 Gene=g16323 Length=201
MAFNFEQFNSNSLAQRESNSRATEETQIVPSGYVQIKKNDEKQIFQKSKMNLNLPANINF
LSVANDWLVVIMSNQILFRLNLKQPDKQYEVFLEKFTTGQRISKMFIDPTGSHLLISLVP
KSSGYTCELMYLNKNSNKPKILSKFRDHEITAVGFNYENTSDISTGNILLGTSKGLVFEA
DIGCDGDRLIQNNWKQVFDIG
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
