Gene loci information

Transcript annotation

  • This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1634 g1634.t2 isoform g1634.t2 12240679 12244154
chr_3 g1634 g1634.t2 exon g1634.t2.exon1 12240679 12241256
chr_3 g1634 g1634.t2 TTS g1634.t2 12240685 12240685
chr_3 g1634 g1634.t2 cds g1634.t2.CDS1 12241063 12241256
chr_3 g1634 g1634.t2 exon g1634.t2.exon2 12241313 12241595
chr_3 g1634 g1634.t2 cds g1634.t2.CDS2 12241313 12241595
chr_3 g1634 g1634.t2 exon g1634.t2.exon3 12242799 12242828
chr_3 g1634 g1634.t2 cds g1634.t2.CDS3 12242799 12242828
chr_3 g1634 g1634.t2 exon g1634.t2.exon4 12242885 12243465
chr_3 g1634 g1634.t2 cds g1634.t2.CDS4 12242885 12243465
chr_3 g1634 g1634.t2 exon g1634.t2.exon5 12243526 12244154
chr_3 g1634 g1634.t2 cds g1634.t2.CDS5 12243526 12244048
chr_3 g1634 g1634.t2 TSS g1634.t2 NA NA

Sequences

>g1634.t2 Gene=g1634 Length=2101
AGGTTATGAAGATTCAAAGTTTCACATCGATGATTATAGTCTTTTCTTCTCTGGCTCACG
CTATCCAATTGGAAATGATGTTGAGCTACCAAATTTTCGTGATTGGATGGGACAAAAATT
CGAGCTTTCAGTTCTCGAAAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTGAA
TGAAACATTTTACAATACGATAAAAGATATGAAAATGGATTATTCAGTAGATGGTGAAGA
TCGGTTTATTCGCTGTCATGGTCAAACTCTCCACGACATTTATAACATAAGAGCTAACAA
ATTTAAACGCATTCCCGATTTAATTCTTTGGCCAAAATGTCATGATGATGTTGTCAAAAT
TGTAAAGTTAGCCGACGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGTGT
TAGTGGTTCTATCACTTGTCCGCAAGACGAAGAACGCTCAATTGTCGTCATTGATACTTC
ACAAATGAATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTCGAAAGTGG
TATTATTGGACAGGATTTAGAAAGAACACTAAAAGATGAAGGCTTAACAATGGGACATGA
ACCAGATAGTATTGAATTTTCTACTCTTGGTGGATGGATTGCAACTAGAGCATCGGGCAT
GAAAAAGAATGTCTATGGCAATATTGAAGACATTGTTATACGAGTGAAAATGGTGACATG
TAAAGGTGTACTTGAACGGAATATTTCAGCTCCTCGTGTGAGTTGTGGACCTGATTTCAA
TCAATTAATACTTGGTAGTGAAGGAACACTTGGTATTGTCACTGAAGTTATAGTCAAAGT
TCGACCTTTGCCTGCTGTTAAAAAGTATGGCTCGCTTGTATTTCCTAACTTTGAAATGGG
AGTTAGTTGTCTACGTGAGATTGCCAAGAGGCGATGTCAACCAGCTTCAATAAGATTAAT
GGACAATGAACAATTTCATTTTGGACAATCACTTAAAGCCGATAATGGATTATTTTCAAA
ATTTATCGATAGTTTAAAAATGTTTTTGTTGAGTAAAGTCAAAGGATATGATTTGATGAA
AATTTCTGTTGCAACATTGCTCTTTGAAGGAGATAAAGAAGAAGTTGAGAAACAGGAAAA
ATTAATTTACGAAATTGCTGATCGATATTCTGGTTTAAAAGCTGGTGAAACAAATGGACA
AAAAGGATATGTCTTGACTTACGTCATTGCGTACATTCGGGATCTTGGTCTTAATCATGG
TATAATTTCTGAGTCATTTGAAACTTCAGTGCCATGGGATAAATGCTTATCTTTGTGTAT
TAATGTGAAGGCATGTATAGAATCGGAATGTAAAAAACGCGGAATTATTTACTACTTAGT
CTGCTATCGTGTGACGCAAACTTATGATGCGGGTGCATGTGTCTATTTCTACTTTGGTTT
TCGATGGGATTCTGATTGTTCTGATCCTGTTGGCCAGTATGAAGAAATTGAAAATAAAGC
AAGGGACGAAATTTTAGCTTCAGGTGGTAGCATAAGTCATCATCATGGGATCGGAAAAAT
ACGTGCTAAATGGTACAAGCAAAGTGTTTCACCTATTGGCGTAAACCTTTACAAGTCAGC
AAAACTTGAACTTGATCCTAAAAATATATTTGGCCTCAATAATTTACTTACTGAAGAAGA
TCAAATTAATTTTGAAACATTAAATTCTAAATTATGATTTTTTAAAACTTTTGTAATGCG
AGAGCTGTTTAAAATTTTTGGTATGCAGGGGAAAATGACAACTTAAGTAACTTAAGCAAG
GAACACAAAAGAATCAATATAAAAAATTTAATTATCACTTATGAATCACGCAAAAAATAA
ATAGAAACTCTTTTTTCTTAGTTAAAACATGGTAGCCTAAAAGAGACTTAAATTTTATAA
TTTTTACATATTGTACTCATGACTTTGGACTGAATTTCAGATATTTTATTTTTGTTTACT
TCTCATTTGGTCGATGATTGAAATAAACTTATGTGTATATATTTTTTGCTAACGTATAAA
CTTTTATTATTGTTCTTTAATGGATAATGGCAATAAAATAAATGCGATAAAAACAAATTT
G

>g1634.t2 Gene=g1634 Length=536
MGQKFELSVLEKPKLPTTFPEPILNETFYNTIKDMKMDYSVDGEDRFIRCHGQTLHDIYN
IRANKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSGSITCPQDEERSIV
VIDTSQMNRLLWLDKENLVACFESGIIGQDLERTLKDEGLTMGHEPDSIEFSTLGGWIAT
RASGMKKNVYGNIEDIVIRVKMVTCKGVLERNISAPRVSCGPDFNQLILGSEGTLGIVTE
VIVKVRPLPAVKKYGSLVFPNFEMGVSCLREIAKRRCQPASIRLMDNEQFHFGQSLKADN
GLFSKFIDSLKMFLLSKVKGYDLMKISVATLLFEGDKEEVEKQEKLIYEIADRYSGLKAG
ETNGQKGYVLTYVIAYIRDLGLNHGIISESFETSVPWDKCLSLCINVKACIESECKKRGI
IYYLVCYRVTQTYDAGACVYFYFGFRWDSDCSDPVGQYEEIENKARDEILASGGSISHHH
GIGKIRAKWYKQSVSPIGVNLYKSAKLELDPKNIFGLNNLLTEEDQINFETLNSKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g1634.t2 Coils Coil Coil 532 536 -
9 g1634.t2 Gene3D G3DSA:3.30.43.10 - 11 127 8.5E-36
7 g1634.t2 Gene3D G3DSA:3.30.465.10 - 128 248 3.8E-43
6 g1634.t2 Gene3D G3DSA:3.30.70.3450 - 249 372 4.4E-49
8 g1634.t2 Gene3D G3DSA:3.30.300.330 - 373 480 7.7E-39
10 g1634.t2 Gene3D G3DSA:1.10.45.10 - 481 521 1.1E-13
3 g1634.t2 PANTHER PTHR46568 ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL 16 521 5.3E-256
1 g1634.t2 Pfam PF01565 FAD binding domain 70 209 9.9E-37
2 g1634.t2 Pfam PF02913 FAD linked oxidases, C-terminal domain 248 515 4.5E-51
12 g1634.t2 ProSiteProfiles PS51387 PCMH-type FAD-binding domain profile. 66 248 24.925
5 g1634.t2 SUPERFAMILY SSF56176 FAD-binding/transporter-associated domain-like 39 249 6.07E-48
4 g1634.t2 SUPERFAMILY SSF55103 FAD-linked oxidases, C-terminal domain 252 519 1.27E-34

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008609 alkylglycerone-phosphate synthase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0003824 catalytic activity MF
GO:0055114 NA NA
GO:0071949 FAD binding MF
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed