General information for g1634.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g1634 is located on chr_3: 12246532..12248387 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1634 | g1634.t3 | TTS | g1634.t3 | 12240685 | 12240685 |
| chr_3 | g1634 | g1634.t3 | isoform | g1634.t3 | 12241337 | 12244152 |
| chr_3 | g1634 | g1634.t3 | exon | g1634.t3.exon1 | 12241337 | 12241595 |
| chr_3 | g1634 | g1634.t3 | cds | g1634.t3.CDS1 | 12241338 | 12241595 |
| chr_3 | g1634 | g1634.t3 | exon | g1634.t3.exon2 | 12242799 | 12242828 |
| chr_3 | g1634 | g1634.t3 | cds | g1634.t3.CDS2 | 12242799 | 12242828 |
| chr_3 | g1634 | g1634.t3 | exon | g1634.t3.exon3 | 12242885 | 12243465 |
| chr_3 | g1634 | g1634.t3 | cds | g1634.t3.CDS3 | 12242885 | 12243465 |
| chr_3 | g1634 | g1634.t3 | exon | g1634.t3.exon4 | 12243526 | 12244152 |
| chr_3 | g1634 | g1634.t3 | cds | g1634.t3.CDS4 | 12243526 | 12244048 |
| chr_3 | g1634 | g1634.t3 | TSS | g1634.t3 | NA | NA |
Sequences
>g1634.t3 Gene=g1634 Length=1497
GTTATGAAGATTCAAAGTTTCACATCGATGATTATAGTCTTTTCTTCTCTGGCTCACGCT
ATCCAATTGGAAATGATGTTGAGCTACCAAATTTTCGTGATTGGATGGGACAAAAATTCG
AGCTTTCAGTTCTCGAAAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTGAATG
AAACATTTTACAATACGATAAAAGATATGAAAATGGATTATTCAGTAGATGGTGAAGATC
GGTTTATTCGCTGTCATGGTCAAACTCTCCACGACATTTATAACATAAGAGCTAACAAAT
TTAAACGCATTCCCGATTTAATTCTTTGGCCAAAATGTCATGATGATGTTGTCAAAATTG
TAAAGTTAGCCGACGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGTGTTA
GTGGTTCTATCACTTGTCCGCAAGACGAAGAACGCTCAATTGTCGTCATTGATACTTCAC
AAATGAATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTCGAAAGTGGTA
TTATTGGACAGGATTTAGAAAGAACACTAAAAGATGAAGGCTTAACAATGGGACATGAAC
CAGATAGTATTGAATTTTCTACTCTTGGTGGATGGATTGCAACTAGAGCATCGGGCATGA
AAAAGAATGTCTATGGCAATATTGAAGACATTGTTATACGAGTGAAAATGGTGACATGTA
AAGGTGTACTTGAACGGAATATTTCAGCTCCTCGTGTGAGTTGTGGACCTGATTTCAATC
AATTAATACTTGGTAGTGAAGGAACACTTGGTATTGTCACTGAAGTTATAGTCAAAGTTC
GACCTTTGCCTGCTGTTAAAAAGTATGGCTCGCTTGTATTTCCTAACTTTGAAATGGGAG
TTAGTTGTCTACGTGAGATTGCCAAGAGGCGATGTCAACCAGCTTCAATAAGATTAATGG
ACAATGAACAATTTCATTTTGGACAATCACTTAAAGCCGATAATGGATTATTTTCAAAAT
TTATCGATAGTTTAAAAATGTTTTTGTTGAGTAAAGTCAAAGGATATGATTTGATGAAAA
TTTCTGTTGCAACATTGCTCTTTGAAGGAGATAAAGAAGAAGTTGAGAAACAGGAAAAAT
TAATTTACGAAATTGCTGATCGATATTCTGGTTTAAAAGCTGGTGAAACAAATGGACAAA
AAGGATATGTCTTGACTTACGTCATTGCGTACATTCGGGATCTTGGTCTTAATCATGGTA
TAATTTCTGAGTCATTTGAAACTTCAGTGCCATGGGATAAATGCTTATCTTTGTGTATTA
ATGTGAAGGCATGTATAGAATCGGAATGTAAAAAACGCGGAATTATTTACTACTTAGTCT
GCTATCGTGTGACGCAAACTTATGATGCGGGTGCATGTGTCTATTTCTACTTTGGTTTTC
GATGGGATTCTGATTGTTCTGATCCTGTTGGCCAGTATGAAGAAATTGAAAATAAAG
>g1634.t3 Gene=g1634 Length=464
MGQKFELSVLEKPKLPTTFPEPILNETFYNTIKDMKMDYSVDGEDRFIRCHGQTLHDIYN
IRANKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSGSITCPQDEERSIV
VIDTSQMNRLLWLDKENLVACFESGIIGQDLERTLKDEGLTMGHEPDSIEFSTLGGWIAT
RASGMKKNVYGNIEDIVIRVKMVTCKGVLERNISAPRVSCGPDFNQLILGSEGTLGIVTE
VIVKVRPLPAVKKYGSLVFPNFEMGVSCLREIAKRRCQPASIRLMDNEQFHFGQSLKADN
GLFSKFIDSLKMFLLSKVKGYDLMKISVATLLFEGDKEEVEKQEKLIYEIADRYSGLKAG
ETNGQKGYVLTYVIAYIRDLGLNHGIISESFETSVPWDKCLSLCINVKACIESECKKRGI
IYYLVCYRVTQTYDAGACVYFYFGFRWDSDCSDPVGQYEEIENK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1634.t3 | Gene3D | G3DSA:3.30.465.40 | - | 40 | 248 | 0.000 |
| 6 | g1634.t3 | Gene3D | G3DSA:3.40.462.40 | - | 51 | 463 | 0.000 |
| 3 | g1634.t3 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 16 | 463 | 0.000 |
| 1 | g1634.t3 | Pfam | PF01565 | FAD binding domain | 70 | 209 | 0.000 |
| 2 | g1634.t3 | Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 248 | 449 | 0.000 |
| 8 | g1634.t3 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 66 | 248 | 24.925 |
| 5 | g1634.t3 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 39 | 249 | 0.000 |
| 4 | g1634.t3 | SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 227 | 461 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed