General information for g1636.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g1636 is located on chr_3: 12255851..12259945 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1636 | g1636.t1 | isoform | g1636.t1 | 12255851 | 12259945 |
| chr_3 | g1636 | g1636.t1 | exon | g1636.t1.exon1 | 12255851 | 12256044 |
| chr_3 | g1636 | g1636.t1 | cds | g1636.t1.CDS1 | 12255851 | 12256044 |
| chr_3 | g1636 | g1636.t1 | exon | g1636.t1.exon2 | 12256100 | 12256382 |
| chr_3 | g1636 | g1636.t1 | cds | g1636.t1.CDS2 | 12256100 | 12256382 |
| chr_3 | g1636 | g1636.t1 | exon | g1636.t1.exon3 | 12259359 | 12259388 |
| chr_3 | g1636 | g1636.t1 | cds | g1636.t1.CDS3 | 12259359 | 12259388 |
| chr_3 | g1636 | g1636.t1 | exon | g1636.t1.exon4 | 12259445 | 12259945 |
| chr_3 | g1636 | g1636.t1 | cds | g1636.t1.CDS4 | 12259445 | 12259945 |
| chr_3 | g1636 | g1636.t1 | TSS | g1636.t1 | NA | NA |
| chr_3 | g1636 | g1636.t1 | TTS | g1636.t1 | NA | NA |
Sequences
>g1636.t1 Gene=g1636 Length=1008
ATGGTGACATGCAAAGGTGTACTTGAACGAAATATTTCAGCTCCTCGTGTGAGTTGTGGA
CCTGATTTCAATCAATTAATACTTGGTAGTGAAGGAACACTTGGTGTTGTCACTGAAGTT
ATAGTCAAAGTTCGACCTTTGCCTGCTGTTAAAAAGTATGGCTCGCTTGTATTTCCTAAC
TTTGAAATGGGTGTCCGTTGTCTACGTGAGATTGCCAAGAGGCGATGTCAACCAGCTTCT
ATAAGATTAATGGACAATGAACAATTTCATTTTGGACAATCACTTAAAGTCGATCATGGA
TTAGTTTCAAAATTTATCGATAGTTTAAAAATGTTTTTGTTGAGTAAAGTCAAAGGATAT
GATTTGATGAAAATTTCTGTTGCAACATTGCTTTTTGAAGGAGATAAAGAAGAAGTTGAA
AAACAGGAAAAATTAATTTACGAAATTGCTGATCGATATTCTGGTTTAAAAGCTGGTGAA
AAAAATGGACAAAAAGGATATGTCATGACTTTCGTTATTGCGTACATTCGGGATTTTAGT
CTTGAACAAGGAATAATTGCTGAGTCATTTGAAACTTCAGTGCCATGGGATAAATGCTTA
TCTTTGTGTAATAATGTGAAGGCGTGTATGGAAGCAGAATGCAAAATAAAAGGAATTCTT
TATTATGTAATCACTTATCGTGTGACGCAAACATATGAGACAGGTGCATGTGTCTATTTC
TACTTTGCTTTTCGATGGGATTCTGATTGCTCTGACCCTGTTAGATTATGTGAAGAAATT
GAAAATAAAGCAAGAGATGAAATTTTGGCTTCAGGTGGTAGCATAAGTCATCATCATGGA
ATCGGAAAAATACGTGCTAAATGGTACAAGCAAAGTGTTTCACCTATTGGCGTAAACCTC
TACAAATCAGCAAAACTTGAACTTGATCCTAAAAATATATTTGGCCTCAATAATTTACTT
ACTGAAGAAGATCAAATTAATTTTGAAGAATTAAATTCAAAATTATGA
>g1636.t1 Gene=g1636 Length=335
MVTCKGVLERNISAPRVSCGPDFNQLILGSEGTLGVVTEVIVKVRPLPAVKKYGSLVFPN
FEMGVRCLREIAKRRCQPASIRLMDNEQFHFGQSLKVDHGLVSKFIDSLKMFLLSKVKGY
DLMKISVATLLFEGDKEEVEKQEKLIYEIADRYSGLKAGEKNGQKGYVMTFVIAYIRDFS
LEQGIIAESFETSVPWDKCLSLCNNVKACMEAECKIKGILYYVITYRVTQTYETGACVYF
YFAFRWDSDCSDPVRLCEEIENKARDEILASGGSISHHHGIGKIRAKWYKQSVSPIGVNL
YKSAKLELDPKNIFGLNNLLTEEDQINFEELNSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g1636.t1 | Gene3D | G3DSA:3.30.465.10 | - | 1 | 47 | 0.0000000 |
| 5 | g1636.t1 | Gene3D | G3DSA:3.30.70.3450 | - | 48 | 171 | 0.0000000 |
| 7 | g1636.t1 | Gene3D | G3DSA:3.30.300.330 | - | 172 | 279 | 0.0000000 |
| 8 | g1636.t1 | Gene3D | G3DSA:1.10.45.10 | - | 280 | 320 | 0.0000000 |
| 2 | g1636.t1 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 1 | 320 | 0.0000000 |
| 1 | g1636.t1 | Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 47 | 314 | 0.0000000 |
| 9 | g1636.t1 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 1 | 47 | 8.6230000 |
| 4 | g1636.t1 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 7 | 48 | 0.0000017 |
| 3 | g1636.t1 | SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 51 | 318 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0071949 | FAD binding | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
