Gene loci information

Transcript annotation

  • This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1637 g1637.t1 isoform g1637.t1 12259993 12260858
chr_3 g1637 g1637.t1 exon g1637.t1.exon1 12259993 12260042
chr_3 g1637 g1637.t1 cds g1637.t1.CDS1 12259993 12260042
chr_3 g1637 g1637.t1 exon g1637.t1.exon2 12260102 12260728
chr_3 g1637 g1637.t1 cds g1637.t1.CDS2 12260102 12260728
chr_3 g1637 g1637.t1 exon g1637.t1.exon3 12260798 12260858
chr_3 g1637 g1637.t1 cds g1637.t1.CDS3 12260798 12260858
chr_3 g1637 g1637.t1 TSS g1637.t1 NA NA
chr_3 g1637 g1637.t1 TTS g1637.t1 NA NA

Sequences

>g1637.t1 Gene=g1637 Length=738
ATGACTCAATACAAATACTCGAATGCGAACAGACAAGAACTTTTGAAGTGGAATGGATGG
GGTTATAAAGATTCAAAATTTTACATAGATGATGATAATATTTTTTTCACTGGCTCACGT
TATCCAATTGGAAATGATATTGAACTACCAAATTTCCGTGATTATATTTTGGAAAGATTT
GAAATTTCGATTCTCGATAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTGAAT
GAAACATTTTACAATGCGATAAAAGATATGAAAATGGATTATTCAGTAGATGGTGAAGAT
CGGTTTATTCGCTGCCATGGTCAAACTCTTCAAGACATTTATTATGTAAGAACTAACAAA
TTCAAACGCATTCCCGATTTAATTCTTTGGCCAAAGTGTCATGATGATGTTGTTAAAATT
GTAAAGTTAGCCGATGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGTGTT
AGTGGTTCTATCACTTGTCCACAAGACGAAGAACGCTCAATTGTCGTCATTGATACTTCA
CAAATGAATCGACTTTTATGGCTTGACAAAGAGAATCTTTTGGCTTGTTTTGAAAGTGGT
ATTGTTGGACAGGATTTAGAAAGAATTCTTCAAGATGAATGCTTAACAATGGGACATGAA
CCAGATAGTATTGAATTTTCAACTCTTGGTGGATGGATTGCAACTCGAGCATCGGGCATG
AAAAAGAATCGGGCATGA

>g1637.t1 Gene=g1637 Length=245
MTQYKYSNANRQELLKWNGWGYKDSKFYIDDDNIFFTGSRYPIGNDIELPNFRDYILERF
EISILDKPKLPTTFPEPILNETFYNAIKDMKMDYSVDGEDRFIRCHGQTLQDIYYVRTNK
FKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSGSITCPQDEERSIVVIDTS
QMNRLLWLDKENLLACFESGIVGQDLERILQDECLTMGHEPDSIEFSTLGGWIATRASGM
KKNRA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1637.t1 Gene3D G3DSA:3.30.43.10 - 15 182 0.000
6 g1637.t1 Gene3D G3DSA:3.30.160.650 - 24 64 0.000
4 g1637.t1 Gene3D G3DSA:3.30.465.10 - 183 245 0.000
2 g1637.t1 PANTHER PTHR46568 ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL 6 243 0.000
1 g1637.t1 Pfam PF01565 FAD binding domain 125 244 0.000
7 g1637.t1 ProSiteProfiles PS51387 PCMH-type FAD-binding domain profile. 121 245 16.195
3 g1637.t1 SUPERFAMILY SSF56176 FAD-binding/transporter-associated domain-like 78 240 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008609 alkylglycerone-phosphate synthase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA
GO:0071949 FAD binding MF
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed