General information for g16417.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16417 is located on chr_4: 9388161..9392232 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16417 | g16417.t4 | TTS | g16417.t4 | 9388102 | 9388102 |
| chr_4 | g16417 | g16417.t4 | isoform | g16417.t4 | 9388104 | 9388930 |
| chr_4 | g16417 | g16417.t4 | exon | g16417.t4.exon1 | 9388104 | 9388930 |
| chr_4 | g16417 | g16417.t4 | cds | g16417.t4.CDS1 | 9388161 | 9388481 |
| chr_4 | g16417 | g16417.t4 | TSS | g16417.t4 | 9389345 | 9389345 |
Sequences
>g16417.t4 Gene=g16417 Length=827
AATATATGAGTGCATTGGTGAAAGATAAGATTAAAAAAGATTTTGGTTGACAATAAATAT
GACAATTTTTCTACAATGTGTGTGAAAGCATGACTGATAAATTGCAAGTATTTGAATTTA
TAAAATTTTAGAAATGAGAATGTATTTTTGATTAAATTTCATGCAGTGCTTCTTAATGAA
TTCTAATACATAAAAATAATAGATTGCTTTATAAACGGCATGTCATAAAAAGAATCAAAT
GTATTTGGATTCATAAAATTAAAAAAAAATAATTCGTTTATGTACAAATTTTATTCATTA
TTTTATTCAATATTTTTTATTCATTTTTTTACCACTTTTTACTTTGATTTTAACTCAAAT
TTAATTAGGATAATTCTGCACCCTGCATCAGCAATTTTGAGATATTTTTGCTAATAAACT
TATGTTTTTTTTAAATATTAGAAGTTGGAATGTGGGCGTACAGCTGCAAACGTGAAAAGA
ACGAAAAATATGAAGAACTTATCAAAAAGACAATTCCATCTTATCTTAGCAAGCTTGATG
AGCAAGCAGGAAAAAATGGAGGTTTCTTGGCAATCAAAGATAAAATAACATGGGCTGATT
GTTTTGCAACAGGCGTCTTGGAATATATCAACAGTTTGGTAGATCTTGATGTGCTTGTTG
ATTATAAAAATTTACAAAAAGTTCGTGAAAATGTCGTTTCTTCCGAAGGTGTTAAAAAAT
ATTTGAAAAATCGTCCAGCTGAAGGAGAAAATCCTTTTAAAACTTGGTAGAAAAAATCTT
TTGTTTTTATGACTTTGTTGATGAAATAAAAAGTTTGAAATTTAAAT
>g16417.t4 Gene=g16417 Length=106
MWAYSCKREKNEKYEELIKKTIPSYLSKLDEQAGKNGGFLAIKDKITWADCFATGVLEYI
NSLVDLDVLVDYKNLQKVRENVVSSEGVKKYLKNRPAEGENPFKTW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16417.t4 | CDD | cd03192 | GST_C_Sigma_like | 9 | 82 | 0.000 |
| 5 | g16417.t4 | Gene3D | G3DSA:1.20.1050.10 | - | 2 | 98 | 0.000 |
| 2 | g16417.t4 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 8 | 97 | 0.000 |
| 3 | g16417.t4 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 8 | 97 | 0.000 |
| 1 | g16417.t4 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 4 | 95 | 0.000 |
| 6 | g16417.t4 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 103 | 15.468 |
| 4 | g16417.t4 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 8 | 96 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
