Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16417 g16417.t5 TTS g16417.t5 9388102 9388102
chr_4 g16417 g16417.t5 isoform g16417.t5 9388161 9389119
chr_4 g16417 g16417.t5 exon g16417.t5.exon1 9388161 9388489
chr_4 g16417 g16417.t5 cds g16417.t5.CDS1 9388161 9388489
chr_4 g16417 g16417.t5 exon g16417.t5.exon2 9388948 9389119
chr_4 g16417 g16417.t5 cds g16417.t5.CDS2 9388948 9389098
chr_4 g16417 g16417.t5 TSS g16417.t5 9389345 9389345

Sequences

>g16417.t5 Gene=g16417 Length=501
TCAGCAACACCACTCGGACAAATGCCAATACTTGAGATTGATGGCAAAGTATATCATCAA
TCAATTCCAATTTGTCGCTACCTTGGCAACAAATTTAATCTTACCGGTGATAATGCAGAA
GAAATTTATGAAGTTGATGTTGCTGCTGAAACTGTGAATGAATTACGTGGAAAAGTTGGA
ATGTGGGCGTACAGCTGCAAACGTGAAAAGAACGAAAAATATGAAGAACTTATCAAAAAG
ACAATTCCATCTTATCTTAGCAAGCTTGATGAGCAAGCAGGAAAAAATGGAGGTTTCTTG
GCAATCAAAGATAAAATAACATGGGCTGATTGTTTTGCAACAGGCGTCTTGGAATATATC
AACAGTTTGGTAGATCTTGATGTGCTTGTTGATTATAAAAATTTACAAAAAGTTCGTGAA
AATGTCGTTTCTTCCGAAGGTGTTAAAAAATATTTGAAAAATCGTCCAGCTGAAGGAGAA
AATCCTTTTAAAACTTGGTAG

>g16417.t5 Gene=g16417 Length=159
MPILEIDGKVYHQSIPICRYLGNKFNLTGDNAEEIYEVDVAAETVNELRGKVGMWAYSCK
REKNEKYEELIKKTIPSYLSKLDEQAGKNGGFLAIKDKITWADCFATGVLEYINSLVDLD
VLVDYKNLQKVRENVVSSEGVKKYLKNRPAEGENPFKTW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16417.t5 CDD cd03192 GST_C_Sigma_like 33 135 0.0000000
7 g16417.t5 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 146 0.0000000
6 g16417.t5 Gene3D G3DSA:1.20.1050.10 - 26 137 0.0000000
2 g16417.t5 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 1 150 0.0000000
3 g16417.t5 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 1 150 0.0000000
1 g16417.t5 Pfam PF14497 Glutathione S-transferase, C-terminal domain 48 148 0.0000000
9 g16417.t5 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 29 13.0850000
8 g16417.t5 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 31 156 17.4770000
4 g16417.t5 SUPERFAMILY SSF52833 Thioredoxin-like 1 26 0.0000404
5 g16417.t5 SUPERFAMILY SSF47616 GST C-terminal domain-like 27 149 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values