Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16419 g16419.t24 TTS g16419.t24 9392821 9392821
chr_4 g16419 g16419.t24 isoform g16419.t24 9392882 9395632
chr_4 g16419 g16419.t24 exon g16419.t24.exon1 9392882 9393198
chr_4 g16419 g16419.t24 cds g16419.t24.CDS1 9392882 9393198
chr_4 g16419 g16419.t24 exon g16419.t24.exon2 9394140 9394307
chr_4 g16419 g16419.t24 cds g16419.t24.CDS2 9394140 9394248
chr_4 g16419 g16419.t24 exon g16419.t24.exon3 9395035 9395632
chr_4 g16419 g16419.t24 TSS g16419.t24 9395732 9395732

Sequences

>g16419.t24 Gene=g16419 Length=1083
ATGGTGGTTTACAAATTACATTATTTTAATTTAACTGGTTTGGGTGAACCGATTCGATTT
TTATTCCATTATGGTGGAATTGATTTTGAAGATGTGAGGTATGAAATGAATGAATGGGTC
GATCTTAAAAAAAGTAAGTAAAATATTCTTTAATGTTTTGAATTTAAAATAAAAAAATTT
TTAATCATTTAGAATTTAATAAAATGTAACAATTTCTTAAATTTAAAAATATAAAATGAA
AATTTTATTAGGGAATAAAAAATAAAATTCTTTTAAAATTTAAAACTGTTCATCTTTCGT
TTTTTTTGGAAAATTTTATGATTGTTTTATAGAATAAAGAATGAATTACCTGTAAATTTC
ACAATTTATAGAAAATTGAAAACTACCGAGATATTTCTTGAATGAAGAAATATAATAAGA
CTGAAGCGTTGATGCAAGCGTTGTTTACGCTTTATAAACAAGAAACTGAGAGTAATTATC
ATAAAATTCTATAGTTTTATTTTGCTTTTTTAAATGTTTGACGCTAATTAAGACTAATTG
AAAACATTTGATGCTGAATTTATTTTTAAATTATAATGTCAACAGATTCTGTCATCTGAA
TTCCCTCTTGGTCAATTACCAGTCTTAGAAATAGACGACAAAGAGCATGTTCAATCAATG
GCAATTTGTCGCTATTTAGCAAAACAAGTCGGTCTTGCTGGAGACAGTGACCTTGAAAAC
ATGGAAATTGATGCGGTTGTTGATACTTTCAATGATATTCGTCTTAAAATTTCAACTGTG
ATGTGGGAACAAAATCAGGAAGTAAAAAAAGAGAAACAAAAAATTCTACACGAGCAGCAA
ATTCCATTTTATTTTAAGAAGCTTGATGAATATGCCGAAGCCAATAATGGACATTTTGCA
TGTAAAAAATTAACTTGGGCTGACTTGTACATCGCATCTTGGTCAAAGTATTTCTCTTAT
GCCATCAAAGAAGTCTTCAATGATTATGAAAACTATCCAAACATTAAGAAAGTTGTCGAC
AATGTTTTAGCAATTGAAAACATTAAAAAATGGGTTGAAACAAGACCCGACACATTCTGT
TGA

>g16419.t24 Gene=g16419 Length=141
MAICRYLAKQVGLAGDSDLENMEIDAVVDTFNDIRLKISTVMWEQNQEVKKEKQKILHEQ
QIPFYFKKLDEYAEANNGHFACKKLTWADLYIASWSKYFSYAIKEVFNDYENYPNIKKVV
DNVLAIENIKKWVETRPDTFC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g16419.t24 CDD cd03192 GST_C_Sigma_like 20 123 0.000
5 g16419.t24 Gene3D G3DSA:1.20.1050.10 - 12 125 0.000
2 g16419.t24 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 1 139 0.000
3 g16419.t24 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 1 139 0.000
1 g16419.t24 Pfam PF14497 Glutathione S-transferase, C-terminal domain 32 136 0.000
7 g16419.t24 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 15 8.434
6 g16419.t24 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 17 141 17.501
4 g16419.t24 SUPERFAMILY SSF47616 GST C-terminal domain-like 13 139 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values