Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16419 g16419.t58 TTS g16419.t58 9392821 9392821
chr_4 g16419 g16419.t58 isoform g16419.t58 9392882 9395632
chr_4 g16419 g16419.t58 exon g16419.t58.exon1 9392882 9394307
chr_4 g16419 g16419.t58 cds g16419.t58.CDS1 9392882 9393184
chr_4 g16419 g16419.t58 exon g16419.t58.exon2 9395162 9395261
chr_4 g16419 g16419.t58 exon g16419.t58.exon3 9395500 9395632
chr_4 g16419 g16419.t58 TSS g16419.t58 9395732 9395732

Sequences

>g16419.t58 Gene=g16419 Length=1659
ATGGTGGTTTACAAATTACATTATTTTAATTTAACTGGTTTGGGTGAACCGATTCGATTT
TTATTCCATTATGGTGGAATTGATTTTGAAGATGTGAGGTATGAAATGAATGAATGGGTC
GATCTTAAAAAAAAAAATTGAAAACTACCGAGATATTTCTTGAATGAAGAAATATAATAA
GACTGAAGCGTTGATGCAAGCGTTGTTTACGCTTTATAAACAAGAAACTGAGAAATTCCC
TCTTGGTCAATTACCAGTCTTAGAAATAGACGACAAAGAGCATGTTCAATCAATGGCAAT
TTGTCGCTATTTAGCAAAACAAGTCGGTCTTGCTGGAGACAGTGACCTTGAAAACATGGA
AATTGATGCGGTTGTTGATACTTTCAATGATATTCGTCTTAGTAAGTAATGAATGAAACG
AGTTAGAATGTTTATTTTTAGAAATTCATTGCTAGAATGTTTCAATTGTTGATTGTTATT
GTTTATGACTGTATTGAATGTTGAACAAGAAATAATATTCAAATGACGATAAATCAATGA
GTAATGCAGATTTTGCTTATGGGAAATTTTTAATGGAATTTTTTTACCAGTTTAAATTTT
CTTTCTTATGGTTTTGGGTGATTGAAACAGTTCAAATATGTATACATAAAATTCCCAATT
TTATTACAAATTATGCTCCATTCAAAAGGGAAAAAATTATGAAGCATGAGTAAGCATTAA
ATTAATTTTTTATGTCAGTGTTGGTAATTGGTAACAAACAGATCTATGGATTTTTGATAG
CAGACACTGTTTTATAGGTACAAATTATTTTTCCTACTATCATGTTTTTATTTAAATGGT
CAACAAACTTCATGCAGAAATGTAAAATAAAATTCATTTTTATCTACTTGACCACTTGCT
CATATAGGTAATTTTTTTCTAAAGCATATCAAGTCAATATCACGCTTAATATTAGGTAGA
TAAAAGTAAGTAACTGTTATAACAACACTGCTTTTCACACATACTTAAAACAAAGTGTCC
CTAATGATTTTTCGAACAATTGCTTTTGATGGTTTCATTAGATTACGAAATTATTCCATA
CGAGATTAATTAACAGTCAATTTATTGTTTTTATCTAACATTCTCCATCATGTGATTGTT
TTAAATATTTTATAATTTAAATGACATTTCAGATCTTTTACTGTCTTCATTAATCATATG
AAAATTTTAATCTCACTAAAGGTGACCTTTATTTTACCAAATTTTACGTAATACAAATTC
AAGATCAATCTCGTTTCAAACATTCTAACAAATTTTTTTAGAACTTTCTTGTTTCTTAAA
AAATCTCTTTTTTTTTCAATAGAAATTTCAACTGTGATGTGGGAACAAAATCAGGAAGTA
AAAAAAGAGAAACAAAAAATTCTACACGAGCAGCAAATTCCATTTTATTTTAAGAAGCTT
GATGAATATGCCGAAGCCAATAATGGACATTTTGCATGTAAAAAATTAACTTGGGCTGAC
TTGTACATCGCATCTTGGTCAAAGTATTTCTCTTATGCCATCAAAGAAGTCTTCAATGAT
TATGAAAACTATCCAAACATTAAGAAAGTTGTCGACAATGTTTTAGCAATTGAAAACATT
AAAAAATGGGTTGAAACAAGACCCGACACATTCTGTTGA

>g16419.t58 Gene=g16419 Length=100
MWEQNQEVKKEKQKILHEQQIPFYFKKLDEYAEANNGHFACKKLTWADLYIASWSKYFSY
AIKEVFNDYENYPNIKKVVDNVLAIENIKKWVETRPDTFC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g16419.t58 Gene3D G3DSA:1.20.1050.10 - 1 84 0.000
2 g16419.t58 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 2 98 0.000
3 g16419.t58 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 2 98 0.000
1 g16419.t58 Pfam PF14497 Glutathione S-transferase, C-terminal domain 5 95 0.000
6 g16419.t58 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 1 100 14.983
4 g16419.t58 SUPERFAMILY SSF47616 GST C-terminal domain-like 4 98 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed