General information for g16433.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16433 is located on chr_4: 9426103..9426659 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16433 | g16433.t12 | isoform | g16433.t12 | 9421998 | 9422980 |
| chr_4 | g16433 | g16433.t12 | exon | g16433.t12.exon1 | 9421998 | 9422980 |
| chr_4 | g16433 | g16433.t12 | TTS | g16433.t12 | 9422031 | 9422031 |
| chr_4 | g16433 | g16433.t12 | cds | g16433.t12.CDS1 | 9422579 | 9422968 |
| chr_4 | g16433 | g16433.t12 | TSS | g16433.t12 | NA | NA |
Sequences
>g16433.t12 Gene=g16433 Length=983
CGCAATCATTACATGGAACTGACAGAAGAAGTTAAAAATATTCTCGGATCAATTCCAGTT
GATTACTTAAATTATTGGCTATCAAAATTTCCTCATTTAGCTCCACATGCTTATCATGTA
ATGTCATCAAATCAAAAAGATTCAACATTTTCAAGATTTTATGTTCGTTATCATCTTTTT
ACAAAACCTAGTTACATATCAGACACAAATCTTGACAATCATGAATTGGTTGAATTACAA
GCAAAATGTAGAGCTGAAAATGCAAATTCTAAATTTAATAACAATCAAAACTTTCAAAAC
CATGGAAGTCCAAATGGAAGAAAATTCTACAATAACAATAATTGGAATAAAAATAAAAAT
AGCAAACGAGGATTTTATAATTTTAAAAATAATGAAACGTGACTTGTGACAAATAAAAAA
ATAAATAATTTAGATTTTTATTCTTCATCAAATGGTGGCAAACCAAATTCTTCAGGTCGG
AAACAATTGAGTGATTTTAGAATTACTGTTGCATTTTTGACTTTAGTTTTTGAAATTCGA
TGATCAGGTACAGCAACGACTTGCATTCCAGCTGATAATGCTGCTTGAACACCACTTGGT
GAATCTTCAAAAACGAGGCACTAAAAATATTTCAAATTTGTTTAATTTTACAAAATTTTC
AAAATTCTACTAAAAAATTATTGAATTTACATTTTCATTCTTAGGGCAATCATCAAATCT
TTTAGCAGCAATTAAAAAAATGTCAGGTGCCGGTTTTCCATTCTTGACTTCACAATCACT
AGCGCCCATGACAATGTGGTTAAATTTTTTAAAAAGCTCTTTATGGTTCATTGTTTTCAC
CATAAACGCTTCTCTCGAGCTACTTGTGGCAATACAAATTGGTATCTTGTTATTGAATAA
ATGTCGAATGAGACGATCAGCACCTGTTAAAATAAAGACAGAAAAATAAGAAAAAAATTA
TAAAATTATTTTCTTTACCATCA
>g16433.t12 Gene=g16433 Length=129
MELTEEVKNILGSIPVDYLNYWLSKFPHLAPHAYHVMSSNQKDSTFSRFYVRYHLFTKPS
YISDTNLDNHELVELQAKCRAENANSKFNNNQNFQNHGSPNGRKFYNNNNWNKNKNSKRG
FYNFKNNET
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g16433.t12 | Gene3D | G3DSA:1.20.1440.180 | - | 1 | 66 | 0.000 |
| 1 | g16433.t12 | Pfam | PF06479 | Ribonuclease 2-5A | 2 | 50 | 0.000 |
| 3 | g16433.t12 | ProSiteProfiles | PS51392 | KEN domain profile. | 1 | 52 | 12.068 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006397 | mRNA processing | BP |
| GO:0004540 | ribonuclease activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
