General information for g16433.t15
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine/threonine-protein kinase/endoribonuclease ire-1.
Parent gene
- The parent gene g16433 is located on chr_4: 9426103..9426659 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16433 | g16433.t15 | isoform | g16433.t15 | 9424270 | 9426659 |
| chr_4 | g16433 | g16433.t15 | exon | g16433.t15.exon1 | 9424270 | 9424673 |
| chr_4 | g16433 | g16433.t15 | cds | g16433.t15.CDS1 | 9424271 | 9424673 |
| chr_4 | g16433 | g16433.t15 | exon | g16433.t15.exon2 | 9424841 | 9425066 |
| chr_4 | g16433 | g16433.t15 | cds | g16433.t15.CDS2 | 9424841 | 9425066 |
| chr_4 | g16433 | g16433.t15 | exon | g16433.t15.exon3 | 9425804 | 9425925 |
| chr_4 | g16433 | g16433.t15 | cds | g16433.t15.CDS3 | 9425804 | 9425925 |
| chr_4 | g16433 | g16433.t15 | exon | g16433.t15.exon4 | 9426017 | 9426092 |
| chr_4 | g16433 | g16433.t15 | cds | g16433.t15.CDS4 | 9426017 | 9426092 |
| chr_4 | g16433 | g16433.t15 | exon | g16433.t15.exon5 | 9426157 | 9426659 |
| chr_4 | g16433 | g16433.t15 | cds | g16433.t15.CDS5 | 9426157 | 9426493 |
| chr_4 | g16433 | g16433.t15 | TSS | g16433.t15 | 9426727 | 9426727 |
| chr_4 | g16433 | g16433.t15 | TTS | g16433.t15 | NA | NA |
Sequences
>g16433.t15 Gene=g16433 Length=1331
ATGAAAATCAATTTCAAGTTTTTAATTTTTATTTTTATCTTTCAATGGATAAATTTGGGT
AAAACTGATGATGATTTGGTAAGAAAATTCCAAAATTTATCTTTGGAAAAAAAATAAATT
TAATAAAAAATTTTAGAGAAAAATCGCAAGATCAGATGAACCATTAATGGTTCTTGTGAC
ACTCTCAGGATCAATGATTGGAATCTGTCCACAAACAGCAACACAGAGATGGATAAAACA
ACATGATCCAATTGTCAAAACAAATGGAAATGAAAATTTAAATTTTTCAACAATTTTATT
ACCTGATCCAGTGACTGGAAAATTGTATAACATGAAAACTAGCGATAAAGACAAATATGA
ACTTTCACAAATGGATTTTACAATTCCTGACTTGGTACTTAAAACTCCTTTTATTTCTAA
GGATAAAATTTTATACACTGGAAGAAAATTGGATTCTTGGTTTATGATTAACTCACTAAC
TGGTGAATGCAAGACTGTTATGGATTTTGATGATAACAAAGATAAAAAGACAACAGATTT
AATACCATTTCCAACAATTCATGATGTCTACATAGGAAAAACACAATATGATGTTTGTAT
GACAAATATGTACCCTGATAACAAAACTAGAGAAATATGGAATGTTTCCATGTATCAGTA
CAATGCATTTGAAATGAATAAAGAAATTTATGACAAATATGAATTCAATCACATTGTCAG
CAGTTCAAGTGGGAAAATTCTAACACTTTTTAAAACAACAGGAAAAATTTTCTGGCATAA
AACAGATTTGAATTCACCAGTCGTTGCCTTATTTATGATGGGTAGAAACGGATTTTTAAA
CATTCCATTTACTACAGTTGATGATTCAGTATTTGAAAAGCTTTTGGAGCCTGTTGATTA
TGATAAATTAAAAGATATTCAATTACTTGAAACAATTTTTATCGGTGAAAATAAAAGTGC
AGGCTCAAATTCATTTTATGCTTTACCAACATTATCAGACAATACAACATTTATAATTCG
TGACAAAGTGATAAATTTTTTAAAAGATCCTTCATCAATTATTGGTCATTATTTATTACC
ATCATCAAATTCAGCTGAAACAAATTCAAAATTAATCACTGATGAATCACAAAGCAATAA
ATCTACAGAACTAAAAAATGAAAACAAAAATGAAAAAATCGCAGTGATTTTAGCATTGGT
TGTAATTTTAATTTCCTTGGTGATAACTTTTGGCATAATTGTGATAAAAAGAAAATTAAA
AAATGAAACAAAAAAGAATAATGTCAGTGAAAGCGATGAACAAATCGTCGTGGATTCAAA
AATAGATGAAG
>g16433.t15 Gene=g16433 Length=388
MVLVTLSGSMIGICPQTATQRWIKQHDPIVKTNGNENLNFSTILLPDPVTGKLYNMKTSD
KDKYELSQMDFTIPDLVLKTPFISKDKILYTGRKLDSWFMINSLTGECKTVMDFDDNKDK
KTTDLIPFPTIHDVYIGKTQYDVCMTNMYPDNKTREIWNVSMYQYNAFEMNKEIYDKYEF
NHIVSSSSGKILTLFKTTGKIFWHKTDLNSPVVALFMMGRNGFLNIPFTTVDDSVFEKLL
EPVDYDKLKDIQLLETIFIGENKSAGSNSFYALPTLSDNTTFIIRDKVINFLKDPSSIIG
HYLLPSSNSAETNSKLITDESQSNKSTELKNENKNEKIAVILALVVILISLVITFGIIVI
KRKLKNETKKNNVSESDEQIVVDSKIDE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g16433.t15 | PANTHER | PTHR13954:SF15 | SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE2 | 3 | 245 | 3.1E-33 |
| 2 | g16433.t15 | PANTHER | PTHR13954 | IRE1-RELATED | 3 | 245 | 3.1E-33 |
| 5 | g16433.t15 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 337 | - |
| 6 | g16433.t15 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 338 | 360 | - |
| 4 | g16433.t15 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 361 | 388 | - |
| 3 | g16433.t15 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 338 | 360 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
