Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16433 g16433.t19 TTS g16433.t19 9426073 9426073
chr_4 g16433 g16433.t19 isoform g16433.t19 9426103 9426659
chr_4 g16433 g16433.t19 exon g16433.t19.exon1 9426103 9426659
chr_4 g16433 g16433.t19 cds g16433.t19.CDS1 9426116 9426493
chr_4 g16433 g16433.t19 TSS g16433.t19 9426727 9426727

Sequences

>g16433.t19 Gene=g16433 Length=557
ATGAAAATCAATTTCAAGTTTTTAATTTTTATTTTTATCTTTCAATGGATAAATTTGGGT
AAAACTGATGATGATTTGGTAAGAAAATTCCAAAATTTATCTTTGGAAAAAAAATAAATT
TAATAAAAAATTTTAGAGAAAAATCGCAAGATCAGATGAACCATTAATGGTTCTTGTGAC
ACTCTCAGGATCAATGATTGGAATCTGTCCACAAACAGCAACACAGAGATGGATAAAACA
ACATGATCCAATTGTCAAAACAAATGGAAATGAAAATTTAAATTTTTCAACAATTTTATT
ACCTGATCCAGTGACTGGAAAATTGTATAACATGAAAACTAGCGATAAAGACAAATATGA
ACTTTCACAAATGGATTTTACAATTCCTGACTTGGTACTTAAAACTCCTTTTATTTCTAA
GGATAAAATTTTATACACTGGAAGAAAATTGGATTCTTGGTTTATGATTAACTCACTAAC
TGGTGAATGCAAGACTGTTATGGGTAAAAAACTTAACTTTTTCATCAATTTACAAAATTT
ATAAAAAAAAAAAATAT

>g16433.t19 Gene=g16433 Length=125
MVLVTLSGSMIGICPQTATQRWIKQHDPIVKTNGNENLNFSTILLPDPVTGKLYNMKTSD
KDKYELSQMDFTIPDLVLKTPFISKDKILYTGRKLDSWFMINSLTGECKTVMGKKLNFFI
NLQNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g16433.t19 PANTHER PTHR13954:SF15 SERINE/THREONINE-PROTEIN KINASE/ENDORIBONUCLEASE IRE2 3 112 0
g16433.t19 PANTHER PTHR13954 IRE1-RELATED 3 112 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed