General information for g16539.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein ABHD11.
Parent gene
- The parent gene g16539 is located on chr_4: 9850692..9851646 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16539 | g16539.t1 | TSS | g16539.t1 | 9850609 | 9850609 |
| chr_4 | g16539 | g16539.t1 | isoform | g16539.t1 | 9850692 | 9851646 |
| chr_4 | g16539 | g16539.t1 | exon | g16539.t1.exon1 | 9850692 | 9851461 |
| chr_4 | g16539 | g16539.t1 | cds | g16539.t1.CDS1 | 9850692 | 9851461 |
| chr_4 | g16539 | g16539.t1 | exon | g16539.t1.exon2 | 9851514 | 9851646 |
| chr_4 | g16539 | g16539.t1 | cds | g16539.t1.CDS2 | 9851514 | 9851646 |
| chr_4 | g16539 | g16539.t1 | TTS | g16539.t1 | 9851754 | 9851754 |
Sequences
>g16539.t1 Gene=g16539 Length=903
ATGATTTTAAGATCAACTAGAACAATTTTAACAAATTCTTTCCAACAATCATTAAAAATA
TTAAGAAATTCAAGTACAAAAGCTGTTCAACTTTCATTTCTTGAATTCACGAAAGGCAAT
CCAAATAAAGATGATAATTTAATAGTTCTTCATGGTCTTTTTGGTAGTAAAAATAACTGG
AATAGTTTAAGTAAAGCTTTTGCAGCACAAACGAAACCATCAAGAAGAATTTTTGCAATT
GATGCTCGAAACCATGGAGATTCACCTCATACAGAAGAGCATAGTTATGAATTGATGGCT
TTGGATATAAAAAAGTTTATGGAAGATCAAAAAATTAAAAAGTCAGCAATTTTAGGTCAT
TCAATGGGTGGACGAGCTGTGATAAATTTTGCCCTGAAATTTCCAGAATTGATTGAAAAA
CTTGTTGTTGTTGATATTTCTCCAGTTGGGAAAATTGGAACTAGTCAAAGTGATATTCCT
CTTTTTATTCATGCTATGAAAACAACAGAAATACCAAATAATTATACAATTCATCAAGGA
AGAGCTGTAGCTGATGAAAAACTTAAAGAAATTATTAATGAAAAATCTTTGCGTGATTTT
TTGATTACAAATTTAACAAAAACTGAAAGTGGAGAATTCAAATGGAGAATAAATCTTGAT
ACTTTAGAAAAATGTTTTTATGAACATATCGCAAATTTTCCTGATATTACAAATATGAAA
TTTGATGGACCAACTTTATTTGTTGCTGGATCAAAATCTGATTATGTCAAACCATCAGAT
GAGCCAGTCATTAAGAAAATTTTCCCAAATTCTCAAATTGAATTTTTAGATGCTGGACAT
TGGGTTCATGCAGAGAAAAGTTCAGAATTTTTAAGTCTAGTCTTGAAGTTTTTGAATAAT
TAA
>g16539.t1 Gene=g16539 Length=300
MILRSTRTILTNSFQQSLKILRNSSTKAVQLSFLEFTKGNPNKDDNLIVLHGLFGSKNNW
NSLSKAFAAQTKPSRRIFAIDARNHGDSPHTEEHSYELMALDIKKFMEDQKIKKSAILGH
SMGGRAVINFALKFPELIEKLVVVDISPVGKIGTSQSDIPLFIHAMKTTEIPNNYTIHQG
RAVADEKLKEIINEKSLRDFLITNLTKTESGEFKWRINLDTLEKCFYEHIANFPDITNMK
FDGPTLFVAGSKSDYVKPSDEPVIKKIFPNSQIEFLDAGHWVHAEKSSEFLSLVLKFLNN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16539.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 34 | 299 | 0 |
| 2 | g16539.t1 | PANTHER | PTHR46118 | - | 12 | 300 | 0 |
| 5 | g16539.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 74 | 89 | 0 |
| 4 | g16539.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 117 | 130 | 0 |
| 3 | g16539.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 131 | 144 | 0 |
| 6 | g16539.t1 | PRINTS | PR00111 | Alpha/beta hydrolase fold signature | 245 | 259 | 0 |
| 1 | g16539.t1 | Pfam | PF00561 | alpha/beta hydrolase fold | 47 | 146 | 0 |
| 7 | g16539.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 39 | 299 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K13703 (abhydrolase domain-containing protein 11)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
