Gene loci information

Transcript annotation

  • This transcript has been annotated as Insulin-like receptor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16541 g16541.t1 TSS g16541.t1 9860594 9860594
chr_4 g16541 g16541.t1 isoform g16541.t1 9860780 9869096
chr_4 g16541 g16541.t1 exon g16541.t1.exon1 9860780 9861092
chr_4 g16541 g16541.t1 cds g16541.t1.CDS1 9860780 9861092
chr_4 g16541 g16541.t1 exon g16541.t1.exon2 9864113 9864531
chr_4 g16541 g16541.t1 cds g16541.t1.CDS2 9864113 9864531
chr_4 g16541 g16541.t1 exon g16541.t1.exon3 9864729 9865037
chr_4 g16541 g16541.t1 cds g16541.t1.CDS3 9864729 9865037
chr_4 g16541 g16541.t1 exon g16541.t1.exon4 9865116 9866216
chr_4 g16541 g16541.t1 cds g16541.t1.CDS4 9865116 9866216
chr_4 g16541 g16541.t1 exon g16541.t1.exon5 9866376 9866493
chr_4 g16541 g16541.t1 cds g16541.t1.CDS5 9866376 9866493
chr_4 g16541 g16541.t1 exon g16541.t1.exon6 9866776 9867852
chr_4 g16541 g16541.t1 cds g16541.t1.CDS6 9866776 9867852
chr_4 g16541 g16541.t1 exon g16541.t1.exon7 9867952 9868429
chr_4 g16541 g16541.t1 cds g16541.t1.CDS7 9867952 9868429
chr_4 g16541 g16541.t1 exon g16541.t1.exon8 9868487 9868628
chr_4 g16541 g16541.t1 cds g16541.t1.CDS8 9868487 9868628
chr_4 g16541 g16541.t1 exon g16541.t1.exon9 9868698 9869096
chr_4 g16541 g16541.t1 cds g16541.t1.CDS9 9868698 9869096
chr_4 g16541 g16541.t1 TTS g16541.t1 NA NA

Sequences

>g16541.t1 Gene=g16541 Length=4356
ATGGAAAAAGTCATCAAAAATACAACATACACGAATCATTTACCGCGTGGATATTTTAAA
AAACGAAAACCACCTGATGAAATTATATCAAGTGACGAAACAAGTTCATCATCAATGCAT
ATAAATAGTTACAGTAGTCTAAGTTGTAGATTTAGTGATAATCGATATGTAAATAAATTT
TTTCAATTATGCACATTTTTAATATTAACTACTGTTCTTGGTGTAAACGCAAATGACGAA
TTACGACTAAGACGAGCTATTGAGAATTTTTCACAAACAACGCCAACACCATTAACATTG
CCTAATGATGGAATATGTAAAACGATTGATGTCCGTTTTGATTTAGAAAAGATTCACAGT
TTAGCAGGTTGTCGAGTAGTAGAAGGATCAGTTACAATTCTTGTCTTAGATGAAATCACC
AGTAAAGAAGTTGAAAACATAACTTTTCCAGAACTAGTTGAAGTTACAGGCTATGTTCTG
CTTTATCGTATAAGCGGCTTTACAAGTCTCAACCAACTTTTTCCAAATCTCGCTGTTATT
CGTGGAAGAGATCTGTTCAAAGATTATTCATTTGTTGTTTATGAAATGATTCAATTGGAA
GATATTGGATTAAGAAATTTAATGGCTATTGAAAGAGGAAATGTGAGAATTGAAAAAAAT
GAACTGTTGTGCTTTTCAAAGTCAATAAATTGGAAAAATATTATTCTACAAAATTTTGAT
CCTTATATTGAGAAAAACAAACTTCCAGCTCACTGTCCAAACTGTCCTAACGATAAATGC
AGCAAATCAATAGATGGAAAAAATACATACTGTTGGAATATCGAACACTGTCAAAGAACC
TGCTCAAAATGTCAATCTTCAAATACAAAGAATGAAATGACAATTTACTGCTCACCAAAT
ACTCAAACATGTTGCGATCCTAGTTGCATTGGTGGATGTGAAGATGATAAACCAAAAAAT
TGCTTTGCATGTCGAAAATTTGCTCTAGGAAATTATCCAAATATGCAATGTTTAGACAAA
TGTCCTAATAATACTTATGCTTACCTCGATCGACGATGCTTAACAAAAGATCAATGTTAT
GACCTCAATACAGCAACTGCAACGGACAGCAGTGTCAAAAATCCTGATGCACTGTTTATT
CCTTTTGAAAATGAATGTCGAAAAGATTGTCCACAAAATTATACAAAAGTCAACACTGGA
AGAAATATGACTTGTGAAAAATGTAACGGTCCATGTCTAAAGGAGTGCACATTTATAAAT
ATTGTTGATTCAATTGAAGCAGCTCAAGCATTAAAAGGATGCAACATCATTGAAGGACCT
TTAGAAATTCAAATTCGAGGAATAACAAAAAATCCTGAATCAGGCAAAAATATTGTGAAA
GAACTTGAAGCTTCACTTTCAGGCATTGAAGAAATTAAAGGTTATTTAAAAATTGCTCGA
TCGCATCCAATTCTTTCAATGTCTTTTCTCAAAAAACTTCGTAAAATTCATGGAAATAGT
CTTGAAGGTGGACGTAATGCACTTGTTGTTTGGGAAAATCAAAACTTACAAGAACTTTGG
GATGAATCACATCGAATCGAAATTGTTCAAGGAAAACTTTTCTTTCATTTTAATCCAAAA
CTTTGTTTTTATAAAATTGAACAATTGGCAAATAAAAGTGCAGATGGAAGGAAAAATCCA
ACAGAAATGATAGAAAATTATGATACAGCAAAAATTTCAAATGGTGACAAAACTCCATGC
AATGTCACGCCTTTGAATGTCACAGTTGAAAAAATTCTTCCTAAAGCTGCATTGCTTAGT
TGGAATCCATTGCAACTTGGTGATGAAAGATCTTTGCTTAATTATGTTGTTTACTACATT
GCTGCTCCTAATAAAAATGTTACATTATGGGATGGACGTGATGCATGTGGAAATGATGGT
TGGAGTGTTGAAGATGTCAATGATTTTAGTCATGTTCAGAAAATTACACAGCCATTGACA
AAATTGGAACCATATACACGATATGCTTATTATGTTAAAGCTTACACGTTAGCAACAGAA
AATACTGGAGCACAAAGTGAAATTAGTTATTTTACCACAATGCCTGACATACCAGAAGTT
GTGAAAAGACTTAAATTGACTGCTACTGGACCTGATAAAATTGAAGTAACTTGGGAAACA
CTCAAGAAAGTCAATGGAGAATTAGATCACTATATTTTAAGAGCAACTGCTATTCCTCAG
GATGATAAATTATTGGTACAAAGAGATTATTGCAAAGAACCAATTGACAATACACCAACA
CCATCAACACCATCGAAAGATACATCAATAATAAAAGATGGACCTAAAAATCCAGTAATA
GCACCAGATGGAACTTGTGATTGTCAGAAATGTTCATCAGTTTGTGATAGTAAAACACCA
CTATTTGATGGAGATGATGATCGACAATCAGCAAATGATTTTGAAGATCAAATTCAAGAT
TTTGTTTATAGAAAAAATGATGAAAAACCAAGTGCACAAAAAGAAACAAGAGCAAAACGA
CAAGTTCCAACTGAAATTGAATTTCCATCAAATCCACCAAATGATGGCTCAAGTTCAAAT
ACATTTGATCGAGAATATTTGAAAAATCAAAGTGATTTTTATGTTGAAGATATTGGACCT
GAAAATACAAGCTATGTCTTTACTGGACTTAATCATTACACATTTTATAATATTCGAATT
CGAGCATGTAGAAAACGTGAAAAAGGTGAAGCAGCAGATGCTGAAATTTGTGGACCAGAA
ACAAAAGTTTCTGAAACTACTTTCAAAGAACCAGCAAATGATGATATTTTAACTTTCAAA
GTGGAACCAATTGTGAATAATTCATTGACAAATATTCGAGTCACTTGGGAACCACCAAAT
TCACCCAATGGATTATTACTTGCATTTACAATAAGACATAAAAGAGTTGACATTGATCAT
ACTCAGCCTGTTTTGCATTGTATATCAACAAGTATGCTCAATGGCACTAATCAATATGTT
TTACAGAAATTGGCACCTGGTAATTATAGCATTGATATGATGGCAACATCAATGGCTGGT
AATGGAAATTATACAAAAGCACAATATGTATTGATAAAAGAACAAGGTAATTGGAATAAC
TTATGGATAGTTTTCATTGTATTATTGGTGCTATTTGTTCTTGCCTCAATTGTTTTGTAT
ATAACTTTCAAACGATTATACCTCACAAATATCTCGAGTATGAAATTAATTGCAAATGTT
AATCCTGATTATGCTGGTGTAACTTATCGACAAGATGAATGGGAAATTCCTAGAGAAAAA
ATTATTCAATTGCAAGAACTTGGTTGTGGAAGTTTTGGTATGGTCTATGAAGGACTCATT
AAGGATTTCCGTCAACCAGGTGATGACATTCGTTGTGCAATAAAAACAGTTAATGAAAGT
GCAACTGACAAAGAACGTATAAGTTTTCTAAATGAAGCATCTGTAATGAAACAATTTGAC
ACTCATCATGTAGTTCGTCTTCTTGGTGTTGTGTCACAAGGACAACCAACTCTTGTAGTT
ATGGAATTAATGGCAAATGGTGATTTGAAAAGTTATTTAAGATCACATAGACCTGAATAT
GATACAATTGGAACTGAACCACCACCACAGCCACCAACATTGAGAAGAATTCTTCAAATG
GCAATTGAAATTGCTGATGGCATGGCATACTTGGCAGCAAAGAAATTTGTACATCGCGAT
CTTGCTGCTAGAAATTGCATGGTTGCTGAAGATATGACAGTTAAAATTGGTGACTTTGGT
ATGACTCGAGATATTTATGAAACTGATTATTACAGGAAAGGCACAAAAGGACTTTTGCCA
GTTCGTTGGATGAGTCCTGAATCTTTAAAAGATGGTGTTTTTACATCAAGTAGTGATGTC
TTCAGTTATGGTGTTGTTGTTTGGGAAATGTCAACACTTGCACAACAACCTTATGCTGGT
CTTTCAAATGATCAAGTTTTACGCTATGTTATCGAAGGAGGCGTAATGGAAAGACCAGAA
AATTGTCCTGACAAACTATACGATCTGATGAGAAAATGTTGGCAACATCGACCTTCAGCA
CGTCCATCATTTATGGAAATCATCTCAATGCTTTTAGACAGTGTCAGTTCAGACTTTGAA
AAGGTGAGTTTCTTCCATTCACCAGCTGGTGTTGAAGCATGGCATCAAATACAACAAAAT
GAAGTTGCTGTGCATGTCACTGATGATGTAACGACACCATTGAGACAAGATGAAGATGAA
GACGAAGATGAAGATGATATTCCGAGTTATGATAGAAATCATTTTAATTTGGAAGTTGTA
AGTGGTCTTAAACATCGACGTGATGATGACCTGTAA

>g16541.t1 Gene=g16541 Length=1451
MEKVIKNTTYTNHLPRGYFKKRKPPDEIISSDETSSSSMHINSYSSLSCRFSDNRYVNKF
FQLCTFLILTTVLGVNANDELRLRRAIENFSQTTPTPLTLPNDGICKTIDVRFDLEKIHS
LAGCRVVEGSVTILVLDEITSKEVENITFPELVEVTGYVLLYRISGFTSLNQLFPNLAVI
RGRDLFKDYSFVVYEMIQLEDIGLRNLMAIERGNVRIEKNELLCFSKSINWKNIILQNFD
PYIEKNKLPAHCPNCPNDKCSKSIDGKNTYCWNIEHCQRTCSKCQSSNTKNEMTIYCSPN
TQTCCDPSCIGGCEDDKPKNCFACRKFALGNYPNMQCLDKCPNNTYAYLDRRCLTKDQCY
DLNTATATDSSVKNPDALFIPFENECRKDCPQNYTKVNTGRNMTCEKCNGPCLKECTFIN
IVDSIEAAQALKGCNIIEGPLEIQIRGITKNPESGKNIVKELEASLSGIEEIKGYLKIAR
SHPILSMSFLKKLRKIHGNSLEGGRNALVVWENQNLQELWDESHRIEIVQGKLFFHFNPK
LCFYKIEQLANKSADGRKNPTEMIENYDTAKISNGDKTPCNVTPLNVTVEKILPKAALLS
WNPLQLGDERSLLNYVVYYIAAPNKNVTLWDGRDACGNDGWSVEDVNDFSHVQKITQPLT
KLEPYTRYAYYVKAYTLATENTGAQSEISYFTTMPDIPEVVKRLKLTATGPDKIEVTWET
LKKVNGELDHYILRATAIPQDDKLLVQRDYCKEPIDNTPTPSTPSKDTSIIKDGPKNPVI
APDGTCDCQKCSSVCDSKTPLFDGDDDRQSANDFEDQIQDFVYRKNDEKPSAQKETRAKR
QVPTEIEFPSNPPNDGSSSNTFDREYLKNQSDFYVEDIGPENTSYVFTGLNHYTFYNIRI
RACRKREKGEAADAEICGPETKVSETTFKEPANDDILTFKVEPIVNNSLTNIRVTWEPPN
SPNGLLLAFTIRHKRVDIDHTQPVLHCISTSMLNGTNQYVLQKLAPGNYSIDMMATSMAG
NGNYTKAQYVLIKEQGNWNNLWIVFIVLLVLFVLASIVLYITFKRLYLTNISSMKLIANV
NPDYAGVTYRQDEWEIPREKIIQLQELGCGSFGMVYEGLIKDFRQPGDDIRCAIKTVNES
ATDKERISFLNEASVMKQFDTHHVVRLLGVVSQGQPTLVVMELMANGDLKSYLRSHRPEY
DTIGTEPPPQPPTLRRILQMAIEIADGMAYLAAKKFVHRDLAARNCMVAEDMTVKIGDFG
MTRDIYETDYYRKGTKGLLPVRWMSPESLKDGVFTSSSDVFSYGVVVWEMSTLAQQPYAG
LSNDQVLRYVIEGGVMERPENCPDKLYDLMRKCWQHRPSARPSFMEIISMLLDSVSSDFE
KVSFFHSPAGVEAWHQIQQNEVAVHVTDDVTTPLRQDEDEDEDEDDIPSYDRNHFNLEVV
SGLKHRRDDDL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
33 g16541.t1 CDD cd00064 FU 304 354 4.58325E-7
36 g16541.t1 CDD cd00063 FN3 584 693 1.87554E-7
35 g16541.t1 CDD cd00063 FN3 944 1030 1.60532E-6
34 g16541.t1 CDD cd05032 PTKc_InsR_like 1094 1373 0.0
27 g16541.t1 Gene3D G3DSA:3.80.20.20 - 100 336 1.4E-64
29 g16541.t1 Gene3D G3DSA:2.10.220.10 Hormone Receptor 337 411 2.2E-14
28 g16541.t1 Gene3D G3DSA:3.80.20.20 - 412 590 1.5E-51
24 g16541.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 591 693 2.2E-33
22 g16541.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 702 783 8.0E-5
21 g16541.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 819 927 1.8E-7
23 g16541.t1 Gene3D G3DSA:2.60.40.10 Immunoglobulins 934 1038 9.9E-16
25 g16541.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1077 1182 2.3E-32
26 g16541.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1183 1393 1.8E-64
48 g16541.t1 MobiDBLite mobidb-lite consensus disorder prediction 754 778 -
47 g16541.t1 MobiDBLite mobidb-lite consensus disorder prediction 756 770 -
49 g16541.t1 MobiDBLite mobidb-lite consensus disorder prediction 822 842 -
50 g16541.t1 MobiDBLite mobidb-lite consensus disorder prediction 822 860 -
51 g16541.t1 MobiDBLite mobidb-lite consensus disorder prediction 1411 1433 -
5 g16541.t1 PANTHER PTHR24416:SF106 INSULIN-LIKE GROWTH FACTOR 1 RECEPTOR 102 227 1.4E-277
7 g16541.t1 PANTHER PTHR24416 TYROSINE-PROTEIN KINASE RECEPTOR 102 227 1.4E-277
6 g16541.t1 PANTHER PTHR24416:SF106 INSULIN-LIKE GROWTH FACTOR 1 RECEPTOR 257 1387 1.4E-277
8 g16541.t1 PANTHER PTHR24416 TYROSINE-PROTEIN KINASE RECEPTOR 257 1387 1.4E-277
10 g16541.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 1181 1194 9.4E-32
11 g16541.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 1230 1248 9.4E-32
12 g16541.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 1279 1289 9.4E-32
9 g16541.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 1298 1320 9.4E-32
13 g16541.t1 PRINTS PR00109 Tyrosine kinase catalytic domain signature 1342 1364 9.4E-32
3 g16541.t1 Pfam PF01030 Receptor L domain 123 234 2.7E-22
1 g16541.t1 Pfam PF00757 Furin-like cysteine rich region 252 417 1.6E-23
2 g16541.t1 Pfam PF01030 Receptor L domain 433 549 6.9E-24
4 g16541.t1 Pfam PF07714 Protein tyrosine and serine/threonine kinase 1104 1371 2.9E-94
31 g16541.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 1040 -
32 g16541.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1041 1063 -
30 g16541.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1064 1451 -
46 g16541.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1107 1135 -
44 g16541.t1 ProSitePatterns PS00109 Tyrosine protein kinases specific active-site signature. 1236 1248 -
45 g16541.t1 ProSitePatterns PS00239 Receptor tyrosine kinase class II signature. 1264 1272 -
52 g16541.t1 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 583 696 13.365
54 g16541.t1 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 829 931 9.586
53 g16541.t1 ProSiteProfiles PS50853 Fibronectin type-III domain profile. 937 1035 10.075
55 g16541.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 1101 1385 35.156
43 g16541.t1 SMART SM00261 furin_3 301 347 1.0E-7
39 g16541.t1 SMART SM00060 FN3_2 581 681 0.0011
41 g16541.t1 SMART SM00060 FN3_2 698 909 2.4E-5
40 g16541.t1 SMART SM00060 FN3_2 930 1022 4.0
42 g16541.t1 SMART SM00219 tyrkin_6 1101 1371 1.8E-135
19 g16541.t1 SUPERFAMILY SSF52058 L domain-like 103 273 3.12E-35
17 g16541.t1 SUPERFAMILY SSF57184 Growth factor receptor domain 304 418 1.33E-8
18 g16541.t1 SUPERFAMILY SSF52058 L domain-like 410 581 5.67E-35
14 g16541.t1 SUPERFAMILY SSF49265 Fibronectin type III 580 695 4.59E-27
15 g16541.t1 SUPERFAMILY SSF49265 Fibronectin type III 698 910 9.27E-12
16 g16541.t1 SUPERFAMILY SSF49265 Fibronectin type III 867 1031 4.78E-16
20 g16541.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1077 1371 9.02E-79
38 g16541.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 60 77 -
37 g16541.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1041 1063 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005524 ATP binding MF
GO:0006468 protein phosphorylation BP
GO:0004713 protein tyrosine kinase activity MF
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway BP
GO:0005515 protein binding MF
GO:0004672 protein kinase activity MF
GO:0004714 transmembrane receptor protein tyrosine kinase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values