Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16631 g16631.t1 TTS g16631.t1 10326698 10326698
chr_4 g16631 g16631.t1 isoform g16631.t1 10327351 10332923
chr_4 g16631 g16631.t1 exon g16631.t1.exon1 10327351 10328191
chr_4 g16631 g16631.t1 cds g16631.t1.CDS1 10327351 10328191
chr_4 g16631 g16631.t1 exon g16631.t1.exon2 10328245 10328481
chr_4 g16631 g16631.t1 cds g16631.t1.CDS2 10328245 10328481
chr_4 g16631 g16631.t1 exon g16631.t1.exon3 10331429 10331713
chr_4 g16631 g16631.t1 cds g16631.t1.CDS3 10331429 10331713
chr_4 g16631 g16631.t1 exon g16631.t1.exon4 10331764 10332315
chr_4 g16631 g16631.t1 cds g16631.t1.CDS4 10331764 10332315
chr_4 g16631 g16631.t1 exon g16631.t1.exon5 10332844 10332923
chr_4 g16631 g16631.t1 cds g16631.t1.CDS5 10332844 10332923
chr_4 g16631 g16631.t1 TSS g16631.t1 NA NA

Sequences

>g16631.t1 Gene=g16631 Length=1995
ATGGAAATTGAGAATTTTTTCCGATCATCAACAATTTATGGATTTAAATATTTATCAAAT
AAATTTCATTGGATTGAGAGCTTAAAACGTTTACAAGTTGTTGATTTATTGAGTCAACGT
GGAACTTTTGCAAAAATAAATTTTTCAATTCCAACAGACGATTTTCTTGATGTCATTAAT
GAATTTGACAAAACATATATTTTTAAAGAAATTTACTCTTTTTTTTGGGTAACTCAAGGT
TATACTGGAATAACTGAAATTCTCACTGAATTTGGATTATGCACAAATTTCAACATTGTA
TTAGCAACTGAACTTTTCAATATAAATTTAATAACAAAAGATTTTCATTATGTGCATGAA
TATAATAAATTTTCTATAAGAATCAATTACACAGAGCAAATTCCACGTAGAGTAGCGAGA
GGAAAACAAACTTTTTTATTACAAGCATTTTCTTATAAATGGGATACAATTTGGGAGTTT
AATGGACATACTCTTTTTTTACATAATTCTTATGAGATACCAACAAAATTTACATTAACA
AAAATGATAAACTACAAGGAATTGACAAATATTTTTATTGAACCACATATTATGGCAATT
GATGAATCAATTGAAAATGAATCAATAAAAGATCGTAATTGTTATCTCGATGATGAATAT
CATCTGAAATTTTTCAAAGTCTACACAAAAGCCAATTGTGAGTCAGAATGTTTAACTGAT
TTTATGATCACGCAATGTGGTTGTGTTGAATTTTTTATGATTCAAAATTTTACAACACGA
ATTTGTTCAGCAAGTGAGAAAGAATGTTTTGAAAATGCAAGAAATTTATTTGAAAGACAA
ATCGATCAATGCAAATGTTTACAGCCATGCTTTTATGTCAAATATAATTATCACATTGAA
AGAAAAACCACTAAAACATTTCTTTCAAGCTACAGTTTGTGCTTTAATAATATTGATGTC
GATTACAAACCGCTGAATGTAAAAATTAAAGGACTTGAAAATATTAAAACACAATCACAA
ATTGACTTGTTTTTGCAACAAAATGCAACTTGGAATGAAAAATTTTCAGCTTCATTTGCA
GAAATACTTACAACTTTTACTGTTGGATTTTCTTTTAATTTGATCGAATCAGAAAAATTG
TTGAACTATAAAATAGTTAATGATGACTTTAAATATCAATTAAATTACTCAATGTTGGGA
CAAACTTCAATGCCTAAAATTTCATTAGAATTACATCCTTTAATAACAGACACGAATTCA
CGATTGAAATTTATACTTCGAATAAAAAAACAAAAGTTTCAAAATCAATTTATGAAAACT
TGTAGAGAACATTTAATTAATATTCACAAGCCTAATATTTTACCACATTTTATGAAAAAA
GATGATTTTGTTGAAATTAAACAATCGACAAATGTTTTAATTAATTTAAAAATAACAAAA
ACCGATGAAAATTTAAGATCATTAAGTCCAATTGATCGTGATTGTTATTTTCAAGGAAAA
AAAAGGTTGAAATATTTTAAAATTTATTCTCAAGAATATTGTCAAATGGAATGCATTGTG
GACTACATGGTAAATTTATGTAAATGCCAAATAAAGGAATACATTTATGGGCCAAAGATC
AAATTTGATTTTTGCGATCAAAATAAAAAATATTGTGCTAAAACAGAAGAAAGAAAACTT
TATGAACTTCATGGTTCATCACTAAATAACAATTGTACTTGCCTGCCAGAATGCAATTCT
ATAACTTATCAAACGACTTTTTATCCTGCTGATAATTCAGATGATAAAGAAATTGTCATA
ACTGTGCAACTCAACACTGATGACTTAGTTTTGTATCGAAAAGTTCAACAATTTACATTC
TCTGATGCTGTCTCATATGTTGGTGGATTATTGGGACTTTTTGCAGGAATTTCTTTGCTT
TCAATTGTTGAAATTTTTTATTTTCTCATTTTGAGAGCATGCCATGATTTTTTGAAACAT
TTTAGAACGCAATAA

>g16631.t1 Gene=g16631 Length=664
MEIENFFRSSTIYGFKYLSNKFHWIESLKRLQVVDLLSQRGTFAKINFSIPTDDFLDVIN
EFDKTYIFKEIYSFFWVTQGYTGITEILTEFGLCTNFNIVLATELFNINLITKDFHYVHE
YNKFSIRINYTEQIPRRVARGKQTFLLQAFSYKWDTIWEFNGHTLFLHNSYEIPTKFTLT
KMINYKELTNIFIEPHIMAIDESIENESIKDRNCYLDDEYHLKFFKVYTKANCESECLTD
FMITQCGCVEFFMIQNFTTRICSASEKECFENARNLFERQIDQCKCLQPCFYVKYNYHIE
RKTTKTFLSSYSLCFNNIDVDYKPLNVKIKGLENIKTQSQIDLFLQQNATWNEKFSASFA
EILTTFTVGFSFNLIESEKLLNYKIVNDDFKYQLNYSMLGQTSMPKISLELHPLITDTNS
RLKFILRIKKQKFQNQFMKTCREHLINIHKPNILPHFMKKDDFVEIKQSTNVLINLKITK
TDENLRSLSPIDRDCYFQGKKRLKYFKIYSQEYCQMECIVDYMVNLCKCQIKEYIYGPKI
KFDFCDQNKKYCAKTEERKLYELHGSSLNNNCTCLPECNSITYQTTFYPADNSDDKEIVI
TVQLNTDDLVLYRKVQQFTFSDAVSYVGGLLGLFAGISLLSIVEIFYFLILRACHDFLKH
FRTQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g16631.t1 Gene3D G3DSA:1.10.287.820 - 212 290 6.1E-8
10 g16631.t1 Gene3D G3DSA:1.10.287.770 - 598 653 1.1E-6
4 g16631.t1 PANTHER PTHR11690 AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED 84 306 4.8E-42
6 g16631.t1 PANTHER PTHR11690:SF237 NACH, ISOFORM E-RELATED 84 306 4.8E-42
3 g16631.t1 PANTHER PTHR11690 AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED 350 652 4.8E-42
5 g16631.t1 PANTHER PTHR11690:SF237 NACH, ISOFORM E-RELATED 350 652 4.8E-42
2 g16631.t1 Pfam PF00858 Amiloride-sensitive sodium channel 84 359 2.7E-24
1 g16631.t1 Pfam PF00858 Amiloride-sensitive sodium channel 350 648 2.1E-35
12 g16631.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 622 -
13 g16631.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 623 650 -
11 g16631.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 651 664 -
8 g16631.t1 ProSitePatterns PS01206 Amiloride-sensitive sodium channels signature. 509 529 -
7 g16631.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 629 651 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005272 sodium channel activity MF
GO:0006814 sodium ion transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed