General information for g16656.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Esterase FE4.
Parent gene
- The parent gene g16656 is located on chr_4: 10421519..10422783 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16656 | g16656.t1 | TSS | g16656.t1 | 10419429 | 10419429 |
| chr_4 | g16656 | g16656.t1 | isoform | g16656.t1 | 10419471 | 10421519 |
| chr_4 | g16656 | g16656.t1 | exon | g16656.t1.exon1 | 10419471 | 10420089 |
| chr_4 | g16656 | g16656.t1 | cds | g16656.t1.CDS1 | 10419471 | 10420089 |
| chr_4 | g16656 | g16656.t1 | exon | g16656.t1.exon2 | 10420201 | 10420623 |
| chr_4 | g16656 | g16656.t1 | cds | g16656.t1.CDS2 | 10420201 | 10420623 |
| chr_4 | g16656 | g16656.t1 | exon | g16656.t1.exon3 | 10420691 | 10421156 |
| chr_4 | g16656 | g16656.t1 | cds | g16656.t1.CDS3 | 10420691 | 10421156 |
| chr_4 | g16656 | g16656.t1 | exon | g16656.t1.exon4 | 10421216 | 10421415 |
| chr_4 | g16656 | g16656.t1 | cds | g16656.t1.CDS4 | 10421216 | 10421415 |
| chr_4 | g16656 | g16656.t1 | exon | g16656.t1.exon5 | 10421515 | 10421519 |
| chr_4 | g16656 | g16656.t1 | cds | g16656.t1.CDS5 | 10421515 | 10421519 |
| chr_4 | g16656 | g16656.t1 | TTS | g16656.t1 | 10421544 | 10421544 |
Sequences
>g16656.t1 Gene=g16656 Length=1713
ATGAAAATCATTAGCTTAATATTTTTCTCTATTTTCTTACAATTGTGCACAACTTACGAA
GAAATTGATGAATTATTAGTTGAAATAAATTCAGGAAAAATTTTAGGTAGAGCTTTAGTA
TCAAATTCAGGCAGAACAATTCGTGCTTTTACTGGTATTCCTTATGCAGCTCCACCAATT
GGAAATTTAAGATTCAAACAAGCTCAAAAAGTCACACCGTGGAATAATACATTCATAGCT
CAAAATAAACCAGCAAAATGTCTTCAATTTAATCCATTTATTCGATCATTTGTAATTGAA
GGTCAAGAAGATTGCCTAACTTTAAATGTTTTTGCACCACAAGAAATTGAAGGCAAAAAA
TTTCCAGTGATTGTTTGGTTTCATGGTGGCGGTTGGACTAGAGGTGATGCTTCTCCATAT
GGTCCAGAATATCTCTTAGATCACGACATTATTCTTGTCAGTGGTGAATATAGAGTTGGA
GCACTTGGTTTTTTATCAAGTGAAGACAAAAATGTTCCTGGCAATTTTGGGTTGAAAGAT
CAAGCTTTTATACTTAAATGGGTACAAGAAAATATTGAAAAATTTGGTGGTGATAAAAAC
TCAGTGACTATTTGGGGAGAATCTGCCGGAGGTGCATCAATCCATTATCACATGTATTCA
CCAATGTCACGTGGACTTTTTCATCGTGCAATTTCACATAGTGGAAGTTTATACAACTGC
TGGTCAGATCCAACTCGACCTGGAGTCGCTCGTAAAAATTTTTATCGTTTCGCTATCGAA
GCTGATTGTGCAAAATCAGAAAATGATAATACTGAGGAAGTTGCTGATTGCATGAGAAAA
ATTGAAGCTGAAAAATTGACTGAAATTTCAACAAGAAGTTATTTTTGGGATAATGATCCT
GTTGTACCTTTACAGCCTGTAATTGAATCTTTTGATATGGAAGAAGAACCATTTATTAAA
GAAAGAACTTTTGCTAATCATTCTGTCCATATTCCGTGGTTGATTGGGATGAATAGTGAA
GAAGGATTGCTAAAAGTTGGAGCAATGTTTAATGATAGAAATTTCCTAAACGAACTTCAC
CAAAAATGGAATGAAATCTTACCACATTCATTTTATTATGATCATCTTGATAACAGTCAA
CAAGTTGAGATTACAAAAATATTGAATGAATTTTATTTTGGTAACGAAACTTTATCAGAA
ACAACAATGAGTGATCCAAAAGGATTGATTGATATGTGGACAGATGGTTGGTTTATTGGA
ATTTTTGAAAGTCTAAAATATCGATTTGAAAATGGAGCACGAGACAACACTTTTATTTTT
CATTTTACTCATAAATCAACTGCAAGTTTTAGTATGGCAAATAATTTTCTTGGAACTTGC
CATGTTGATGATTTGATTCCACTTTTTCAACTGAGAAAATCTTTTTATTATAGTTCAGTC
CCGACAAGACATGATAAAGAACTTACTGAAAAAATGACAAAAATGTGGACAAATTTTGCT
ACATTTGGAAATCCAACACCAGAAAATATTTTGGGAATTCCGCAATGGCCAACGATAAAC
AACATTACTTCTTTTAAATATTTACAAATTGGAAATGAAAATGGAAAAACTGAAAGCCTT
TTTCAACTCAAAGAAAATTATTATATTGAAAGAGCTGAACTGTGGATGAATTTGAGAAAT
CATTTTAAATTAAATTCTTGGGAATCAGATTAA
>g16656.t1 Gene=g16656 Length=570
MKIISLIFFSIFLQLCTTYEEIDELLVEINSGKILGRALVSNSGRTIRAFTGIPYAAPPI
GNLRFKQAQKVTPWNNTFIAQNKPAKCLQFNPFIRSFVIEGQEDCLTLNVFAPQEIEGKK
FPVIVWFHGGGWTRGDASPYGPEYLLDHDIILVSGEYRVGALGFLSSEDKNVPGNFGLKD
QAFILKWVQENIEKFGGDKNSVTIWGESAGGASIHYHMYSPMSRGLFHRAISHSGSLYNC
WSDPTRPGVARKNFYRFAIEADCAKSENDNTEEVADCMRKIEAEKLTEISTRSYFWDNDP
VVPLQPVIESFDMEEEPFIKERTFANHSVHIPWLIGMNSEEGLLKVGAMFNDRNFLNELH
QKWNEILPHSFYYDHLDNSQQVEITKILNEFYFGNETLSETTMSDPKGLIDMWTDGWFIG
IFESLKYRFENGARDNTFIFHFTHKSTASFSMANNFLGTCHVDDLIPLFQLRKSFYYSSV
PTRHDKELTEKMTKMWTNFATFGNPTPENILGIPQWPTINNITSFKYLQIGNENGKTESL
FQLKENYYIERAELWMNLRNHFKLNSWESD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16656.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 3 | 564 | 4.1E-147 |
| 2 | g16656.t1 | PANTHER | PTHR11559:SF395 | CARBOXYLIC ESTER HYDROLASE | 4 | 567 | 8.2E-144 |
| 3 | g16656.t1 | PANTHER | PTHR11559 | CARBOXYLESTERASE | 4 | 567 | 8.2E-144 |
| 1 | g16656.t1 | Pfam | PF00135 | Carboxylesterase family | 25 | 542 | 7.1E-128 |
| 10 | g16656.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 11 | g16656.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 2 | - |
| 12 | g16656.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 3 | 13 | - |
| 13 | g16656.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 9 | g16656.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 570 | - |
| 5 | g16656.t1 | ProSitePatterns | PS00941 | Carboxylesterases type-B signature 2. | 103 | 113 | - |
| 6 | g16656.t1 | ProSitePatterns | PS00122 | Carboxylesterases type-B serine active site. | 195 | 210 | - |
| 4 | g16656.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 23 | 526 | 6.31E-121 |
| 7 | g16656.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 18 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
