Gene loci information

Transcript annotation

  • This transcript has been annotated as Peroxisomal acyl-coenzyme A oxidase 3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16757 g16757.t1 TTS g16757.t1 10844838 10844838
chr_4 g16757 g16757.t1 isoform g16757.t1 10844887 10847740
chr_4 g16757 g16757.t1 exon g16757.t1.exon1 10844887 10845449
chr_4 g16757 g16757.t1 cds g16757.t1.CDS1 10844887 10845449
chr_4 g16757 g16757.t1 exon g16757.t1.exon2 10845756 10846505
chr_4 g16757 g16757.t1 cds g16757.t1.CDS2 10845756 10846505
chr_4 g16757 g16757.t1 exon g16757.t1.exon3 10846558 10847366
chr_4 g16757 g16757.t1 cds g16757.t1.CDS3 10846558 10847366
chr_4 g16757 g16757.t1 exon g16757.t1.exon4 10847709 10847740
chr_4 g16757 g16757.t1 cds g16757.t1.CDS4 10847709 10847740
chr_4 g16757 g16757.t1 TSS g16757.t1 10847863 10847863

Sequences

>g16757.t1 Gene=g16757 Length=2154
ATGATTGACTCTAAATTTCATCAAGTTTCAAACACTCAAGAATTCAACAAATATGAAAAC
ATTAATAATGAAGTTTTCCTTAACAAAGATATTTTTCCCGATCTTCATTTACTTGATGGT
CCATTGAAAGTTTATCGTTCTAAAGCAACTTTTGATTGGCGCAAAATGCGTTTGATTTTT
GACACTCTTCAATCATGGGAATTGAAATTTAAAATTTGGAATTTTATCAAAAATAATGAA
ATTTTTGATCAATCAATTGAAACTTTGCCAATTGATGAACAAAGAAAAATTTCAAATCAA
CGAATGTTTGCAGTCATAAATGCAAAACTTTTGACCATTGAAGAATATTTAAGAAATCCA
GAATTAAGTCCAAAATTTTTCTCTGCATTTGGAGTTTATGATGCAAATATCACTGGAAAA
GTTCTTATCGCTTTTTATATGTTTCCAAAAGTCATTCAAAGTCTTGGAAATAAGAGTGTG
AAAAATTTAGTAATGGAAACTCAAGAATTGAAAAACATTGGCTGTTTCGCATTGATTGAA
TTTGCACATGGCAGCAACACTCAAGGAATGAAAACAACAGCAACTTATGAACCTTTAACA
AAATCTTTTGTACTCAACACACCAAATTTTGAAGCTGCAAAATGTTGGATTGGAAATTTG
GGAAAATCAGCAACGCATGCAATTGTTTATGCTCAACTTTATACAAATGATGGAAAATGT
CATGGACTTAATGCTTTTGTTGTACCTTTAAGAGATAGCAAAACTCATTTGACATTTCCT
GGGGTTACTATTGGTGATATGGGCGAAAAAATTTCTATTAATGGAATCGACAATGGATTT
TTAATTTTCAACAACTATAAAATTCCAAAATCAAATTTGCTCTCAAAAACTGGTGACATC
GATGATGATGGAAATTTCATAACACAATTTAAAGATCCAAAAAAACGCATGGGTTTATCA
TTTGCAATGTTATCAGAAGGACGAGTTGGAATTTGTGAATTTACTACAAGTTATGGTGTT
TCAGCAATTTCAATTGCAATTCGTTATTCAGCAAGTCGTAAACAATTTGGACCTGATGAC
ACCAACATTGAATTTCCAGTCATTGAATATCAATCACAACAATATCGTTTGATCCGTCAT
TTGGCAAATATTTTTGCAATTAAATTCTTCTCAAATTGGATTGCAAAAGAATGTGCAAAA
ATTGTCATCAAAGGATTTTCTGGTGAAAAAATTAGTACTGAAAGTGGAATGGAAATGCAT
GCAATTTCATCAGCTGGCAAACCTGTTTGTGGTTGGATTACTCGTGATTGTATTCAAGAT
TGTAGAGAAGCATGTGGTGGTCATGGATATTTAAAATGTGCACGATTGGGTGATTTGAGA
AATTATAATGATCCAAATTTGACTTATGAAGGTGAAAATAATGTTTTAATTCAACAAGCT
TCAAATTTTTTGATTTCTATTAGAGAAAAAGGATGGAATGCTTTTGAAAATGCATCACCA
TTGGAAACTGCTGCATTTTTGAAAGATGGTGAAGAAATCTTAAAATCGAAATGGAAATGG
ACAAAAGTTGAATGTGCAATGAAACCTGAAAATCAACTTCAAACATTAAATTTCATCGTT
GCTTTTCTTCTTGAGAAAACTTTCAAACTTAGAAATTTATTAAAATCACTTGGGCAATCA
ACTTTTGATGCTCGCAATAATTCACAAGTTTTTCATGCAAATTTACTTGCTGTTGCTTAT
GCTCATCGTCAAATTTATGTAACATTCCTCGCTGAAGTTCAAAAACTACCAGATTCATCA
CCAGAACAAGAAATTTTAACGAAATTGTTATCAATGTTTGGTGCAAATTTAATTTCAACA
TTTTACATGAATGTTCTTTATGAAAGTGGATTTGTAACTTCAATAAATGCTTGTGAACTT
CTTCAAACTGGAATTTTACAACTTTTGCCAATAATTAAAGATCAATCAATTGCTTTAGTT
GATGCAATTGCACCTCCTGATTATATTTTGAATTCTCCATTAGGAATGAGTGATGGTGAA
GTTTATAAACATCTTGAAAATTTCATTTATCAATCACCAGATACTTTTACAAGACCATCA
TGGTGGAGAGATATTGTCTATAAGGAAAAGTACCTTGGACTTTCAAAACTGTAA

>g16757.t1 Gene=g16757 Length=717
MIDSKFHQVSNTQEFNKYENINNEVFLNKDIFPDLHLLDGPLKVYRSKATFDWRKMRLIF
DTLQSWELKFKIWNFIKNNEIFDQSIETLPIDEQRKISNQRMFAVINAKLLTIEEYLRNP
ELSPKFFSAFGVYDANITGKVLIAFYMFPKVIQSLGNKSVKNLVMETQELKNIGCFALIE
FAHGSNTQGMKTTATYEPLTKSFVLNTPNFEAAKCWIGNLGKSATHAIVYAQLYTNDGKC
HGLNAFVVPLRDSKTHLTFPGVTIGDMGEKISINGIDNGFLIFNNYKIPKSNLLSKTGDI
DDDGNFITQFKDPKKRMGLSFAMLSEGRVGICEFTTSYGVSAISIAIRYSASRKQFGPDD
TNIEFPVIEYQSQQYRLIRHLANIFAIKFFSNWIAKECAKIVIKGFSGEKISTESGMEMH
AISSAGKPVCGWITRDCIQDCREACGGHGYLKCARLGDLRNYNDPNLTYEGENNVLIQQA
SNFLISIREKGWNAFENASPLETAAFLKDGEEILKSKWKWTKVECAMKPENQLQTLNFIV
AFLLEKTFKLRNLLKSLGQSTFDARNNSQVFHANLLAVAYAHRQIYVTFLAEVQKLPDSS
PEQEILTKLLSMFGANLISTFYMNVLYESGFVTSINACELLQTGILQLLPIIKDQSIALV
DAIAPPDYILNSPLGMSDGEVYKHLENFIYQSPDTFTRPSWWRDIVYKEKYLGLSKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g16757.t1 Gene3D G3DSA:2.40.110.10 - 174 309 0
9 g16757.t1 Gene3D G3DSA:1.20.140.10 - 319 491 0
10 g16757.t1 Gene3D G3DSA:1.20.140.10 - 531 663 0
3 g16757.t1 PANTHER PTHR10909:SF315 PEROXISOMAL ACYL-COENZYME A OXIDASE 3 37 709 0
4 g16757.t1 PANTHER PTHR10909 ELECTRON TRANSPORT OXIDOREDUCTASE 37 709 0
11 g16757.t1 PIRSF PIRSF000168 Acyl-CoA_oxidase 39 713 0
1 g16757.t1 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 175 285 0
2 g16757.t1 Pfam PF01756 Acyl-CoA oxidase 529 706 0
5 g16757.t1 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 111 299 0
7 g16757.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 317 492 0
6 g16757.t1 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 523 708 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0006635 fatty acid beta-oxidation BP
GO:0003997 acyl-CoA oxidase activity MF
GO:0006631 fatty acid metabolic process BP
GO:0005777 peroxisome CC
GO:0055114 NA NA
GO:0071949 FAD binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values