General information for g16761.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Fatty acyl-CoA reductase wat.
Parent gene
- The parent gene g16761 is located on chr_4: 10859657..10862444 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16761 | g16761.t1 | TSS | g16761.t1 | 10859580 | 10859580 |
| chr_4 | g16761 | g16761.t1 | isoform | g16761.t1 | 10859657 | 10862444 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon1 | 10859657 | 10859714 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS1 | 10859657 | 10859714 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon2 | 10859787 | 10859920 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS2 | 10859787 | 10859920 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon3 | 10859984 | 10860533 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS3 | 10859984 | 10860533 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon4 | 10861403 | 10861565 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS4 | 10861403 | 10861565 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon5 | 10861625 | 10861858 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS5 | 10861625 | 10861858 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon6 | 10861944 | 10862195 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS6 | 10861944 | 10862195 |
| chr_4 | g16761 | g16761.t1 | exon | g16761.t1.exon7 | 10862363 | 10862444 |
| chr_4 | g16761 | g16761.t1 | cds | g16761.t1.CDS7 | 10862363 | 10862444 |
| chr_4 | g16761 | g16761.t1 | TTS | g16761.t1 | 10862981 | 10862981 |
Sequences
>g16761.t1 Gene=g16761 Length=1473
ATGGATGTTGATAGAATTGCTGAAGTTTTTAAGGATCAAGTCCTTTTTATTACTGGCGCT
ACGGGATTTATGGGAAAAGTTTTTCTCGAGCGTTTGCTTCGTGTCACTGAAGTTCGTAAA
ATTTTTATTTTGATTCGACCAAAAAGAAATAAAAATTCAGAAGAACGTTTGATTGAACTC
TTTGCTAATCCTCTTTTTGACCAACTCAAATCGATCAAGTCGATGTCAGAAATTTTAGAA
AAAGTTATAGTCATTGCTGGTGATTGCAGTTATAAAGATTTGAATATTTCACCAGCTGAT
CGAGCAGCTATTGTCAGTCAAGTGTCAATGATTTATCATTTTGCAGCAACAGTAAAATTC
AATGAAAAATTTAAACGTGCAATTGAACTGAATGTGCGTGGAACTCGTGAAATGGTCAAA
ATTGCATTTGATTGTTCAAATTTAATTGTTTTTTGTCATGTGTCTACCGCTTATAGCCAT
CTTCATGAAAAACATTTACTGGAAAAAGTTTATGACGCACCTGCAGATCCTCATGAAATC
ATCGAAATCGCAGAAAAATATAATGAAGAAAAAGTTGAGAAGTTGATGAGCAACTTTTTA
AATAAGTTTGTGCCAAACAGCTACGTCTTTACAAAAGCATTATCAGAATCGCTTGTGTCT
AATGCATATGAGACTCATAATTTACCACTCTTATTATGCCGTCCAGCCGTTGTTATTCCT
ATGATGAAAGAACCAATTCCTGGATGGACTGATAATTTGAATAATATTTCTGGAATAGTA
GCAGCATCAGGTCTTGGCGTACTACGAACAATAATGCTCACAGAAGAAACAGAGTTGAAT
TTAATACCTGTGGATTATTCAACTAGCAACATCATGGTTGCCACGTGGGACTATCTGACG
CATCACAAATCAACATTGCGTGTTGTTAATCTTGAATATGAAGGAATCAAAGTCTTAGAA
GGATGGCCAGTTTATGAAGATGCATTTAGAAATTTATATCCTTTTGAAATATCTTTGTGG
TTCCCAAATCTTTCGTTTCCAAAAAATTTCTTATTATATTGCATTCAATATTTCTTTTAT
CAAACAATTCCTGCGCTACTCGTGGACGGATTATTAAAGTTGATTGGCAAGAAACCAATT
CTAAGGAGAGCAAATCAGAAAATTAATAAGGAGATCAATGCTGTTAGAATATTCATGGAC
AACAAGTGGTCTTTTGAGCAAGAAAATGTTAGAATCGCCAATAAACTTTTGAACGACCTT
GAGATAACAAAATACGGCACGTTGCAGCGTGATAGAGTCAATTTTATTAAGAAAAGTGTT
CTTGGAATTAGAAAATATGTGTTTAAGCAGGATGACAAAACTATTGAACGATCAAAGAAG
AGAATTAAACTTGTGTTTTTCATCGACAGATGCATTAAACTTACATTTTTTGTAGGTTTG
GTTTATTTCCTAACAAATTTATTTATGAGATAA
>g16761.t1 Gene=g16761 Length=490
MDVDRIAEVFKDQVLFITGATGFMGKVFLERLLRVTEVRKIFILIRPKRNKNSEERLIEL
FANPLFDQLKSIKSMSEILEKVIVIAGDCSYKDLNISPADRAAIVSQVSMIYHFAATVKF
NEKFKRAIELNVRGTREMVKIAFDCSNLIVFCHVSTAYSHLHEKHLLEKVYDAPADPHEI
IEIAEKYNEEKVEKLMSNFLNKFVPNSYVFTKALSESLVSNAYETHNLPLLLCRPAVVIP
MMKEPIPGWTDNLNNISGIVAASGLGVLRTIMLTEETELNLIPVDYSTSNIMVATWDYLT
HHKSTLRVVNLEYEGIKVLEGWPVYEDAFRNLYPFEISLWFPNLSFPKNFLLYCIQYFFY
QTIPALLVDGLLKLIGKKPILRRANQKINKEINAVRIFMDNKWSFEQENVRIANKLLNDL
EITKYGTLQRDRVNFIKKSVLGIRKYVFKQDDKTIERSKKRIKLVFFIDRCIKLTFFVGL
VYFLTNLFMR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g16761.t1 | CDD | cd05236 | FAR-N_SDR_e | 15 | 311 | 4.91832E-93 |
| 14 | g16761.t1 | CDD | cd09071 | FAR_C | 359 | 448 | 1.54565E-14 |
| 7 | g16761.t1 | Gene3D | G3DSA:3.40.50.720 | - | 5 | 336 | 4.0E-60 |
| 3 | g16761.t1 | PANTHER | PTHR11011:SF61 | FATTY ACYL-COA REDUCTASE | 2 | 486 | 4.1E-134 |
| 4 | g16761.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 2 | 486 | 4.1E-134 |
| 1 | g16761.t1 | Pfam | PF07993 | Male sterility protein | 17 | 288 | 8.0E-67 |
| 2 | g16761.t1 | Pfam | PF03015 | Male sterility protein | 360 | 449 | 9.6E-14 |
| 9 | g16761.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 349 | - |
| 12 | g16761.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 350 | 372 | - |
| 8 | g16761.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 373 | 463 | - |
| 11 | g16761.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 464 | 484 | - |
| 10 | g16761.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 485 | 490 | - |
| 6 | g16761.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 298 | 8.07E-24 |
| 5 | g16761.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 466 | 488 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
