General information for g16763.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase.
Parent gene
- The parent gene g16763 is located on chr_4: 10869954..10870716 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16763 | g16763.t1 | isoform | g16763.t1 | 10869954 | 10870716 |
| chr_4 | g16763 | g16763.t1 | exon | g16763.t1.exon1 | 10869954 | 10870384 |
| chr_4 | g16763 | g16763.t1 | cds | g16763.t1.CDS1 | 10869954 | 10870384 |
| chr_4 | g16763 | g16763.t1 | exon | g16763.t1.exon2 | 10870441 | 10870503 |
| chr_4 | g16763 | g16763.t1 | cds | g16763.t1.CDS2 | 10870441 | 10870503 |
| chr_4 | g16763 | g16763.t1 | exon | g16763.t1.exon3 | 10870608 | 10870716 |
| chr_4 | g16763 | g16763.t1 | cds | g16763.t1.CDS3 | 10870608 | 10870716 |
| chr_4 | g16763 | g16763.t1 | TSS | g16763.t1 | NA | NA |
| chr_4 | g16763 | g16763.t1 | TTS | g16763.t1 | NA | NA |
Sequences
>g16763.t1 Gene=g16763 Length=603
ATGAACAAAACAAGAATCGATCTTGTTTGTGATGGTTTGATATCAACTGGTGTTATAAAA
GCTTCGCAAAGAAATCAACCAAATGTATTTCAAGGATTAAAAATTTTAGATCTTGGCTGT
GGCGGAGGAATTTTAGTTGAAGCCCTAGCAAAGCTCAAAGCAGAAGTTACAGAAGATATT
CGTGGCAATGTTCGCTATATACTTGATACAATTGAAGAACATTGCAAGACACATGAAAAT
TATTATGACGTCATCACTTGCAGTGAAGTTCTTGAGCATGTTATTGACAAAAAATCACTT
TTGGATGCTGCTTGTAAAACTCTCAAGCCTGGTGGAAGCATTTTCTTCACAACATTCAAT
AAAACATTTTTTTCTTGGTTCATGGGTATTATTGTGGGCGAATATCTTCTTAGAGTAATT
CCTGTTGGTTGCCATTCTTATAATTTGTTTATTTCACCAGAAGATGTTGCAAAAATTTTA
GAAAAATCAAATTGCAAAACAAACATCTTAAGAGGAATTTATTACAACTGTATAACTCGT
AATTTTTGGGTTTACAAATGGTCTGGATATCATTATGCAATGCAATCAGTTAAAGCAAAA
TAA
>g16763.t1 Gene=g16763 Length=200
MNKTRIDLVCDGLISTGVIKASQRNQPNVFQGLKILDLGCGGGILVEALAKLKAEVTEDI
RGNVRYILDTIEEHCKTHENYYDVITCSEVLEHVIDKKSLLDAACKTLKPGGSIFFTTFN
KTFFSWFMGIIVGEYLLRVIPVGCHSYNLFISPEDVAKILEKSNCKTNILRGIYYNCITR
NFWVYKWSGYHYAMQSVKAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16763.t1 | CDD | cd02440 | AdoMet_MTases | 34 | 114 | 1.8e-06 |
| 8 | g16763.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 1 | 57 | 2.0e-07 |
| 7 | g16763.t1 | Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 58 | 198 | 0.0e+00 |
| 3 | g16763.t1 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 1 | 57 | 0.0e+00 |
| 5 | g16763.t1 | PANTHER | PTHR43464:SF25 | UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL | 1 | 57 | 0.0e+00 |
| 2 | g16763.t1 | PANTHER | PTHR43464 | METHYLTRANSFERASE | 60 | 186 | 0.0e+00 |
| 4 | g16763.t1 | PANTHER | PTHR43464:SF25 | UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL | 60 | 186 | 0.0e+00 |
| 1 | g16763.t1 | Pfam | PF13489 | Methyltransferase domain | 27 | 124 | 0.0e+00 |
| 6 | g16763.t1 | SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 27 | 192 | 0.0e+00 |
| 9 | g16763.t1 | TIGRFAM | TIGR01983 | UbiG: 3-demethylubiquinone-9 3-O-methyltransferase | 63 | 183 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008425 | 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity | MF |
| GO:0006744 | ubiquinone biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed