Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Ubiquinone biosynthesis O-methyltransferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16764 g16764.t1 isoform g16764.t1 10871795 10872691
chr_4 g16764 g16764.t1 exon g16764.t1.exon1 10871795 10872234
chr_4 g16764 g16764.t1 cds g16764.t1.CDS1 10871795 10872234
chr_4 g16764 g16764.t1 exon g16764.t1.exon2 10872297 10872359
chr_4 g16764 g16764.t1 cds g16764.t1.CDS2 10872297 10872359
chr_4 g16764 g16764.t1 exon g16764.t1.exon3 10872463 10872691
chr_4 g16764 g16764.t1 cds g16764.t1.CDS3 10872463 10872691
chr_4 g16764 g16764.t1 TSS g16764.t1 NA NA
chr_4 g16764 g16764.t1 TTS g16764.t1 NA NA

Sequences

>g16764.t1 Gene=g16764 Length=732
ATGAAAACTGATCAAGAATTCTTAGCAAAAAATGTTAATCCATCAGATATCAAATTTTTA
TCACTATTGGCTAAAGAATGGTGGGATACAAAAAATGGTAAATTGATTGGTTTGCACGAT
ATGAACAAAACAAGAATCGATCTTGTTTGTGATGGTTTGATATCAACTGGTGTTATAAAA
GCTTCGCAAAGAAATCAACCAAATGTATTTCAAGGATTAAAAATTTTAGATCTTGGCTGT
GGCGGAGGAATTTTAGTTGAAGCCTTAGCAAAGCTCAAAGCAGAAGTTACGGAAGATATT
CGTGGCAATGTTCGCTATATACTTGATACAATTGAAGAGCATTGCAAGACACATGAAAAT
TATTATGACGTCATCACTTGCAGTGAAGTTCTTGAGCATGTTATTGACAAAAAATCACTT
TTGGATGCTGCTTGTAAAACTCTCAAGCCTGGTGGAAGCATTTTCTTCACAACATTCAAT
AAAACATTTTTTTCTTGGTTCATGGGTATTATTGTGGGCGAATATCTTCTTAGAGTAATT
CCTGTTGGTTGCCATTCTTATGATTTATTTATTTCACCAGAAGATGTTGCAAAAATTTTA
GAAAAATCAATTGCAAAAACAAACATTTTGAGAGGAATTTTTTACAACTTTGTAACTCGT
AATTTTGGGTTTACAAATGGTCTGGATATCATTATGCAATGCAATCAGTTAAAGCAAATA
AATCAGTTTTAA

>g16764.t1 Gene=g16764 Length=243
MKTDQEFLAKNVNPSDIKFLSLLAKEWWDTKNGKLIGLHDMNKTRIDLVCDGLISTGVIK
ASQRNQPNVFQGLKILDLGCGGGILVEALAKLKAEVTEDIRGNVRYILDTIEEHCKTHEN
YYDVITCSEVLEHVIDKKSLLDAACKTLKPGGSIFFTTFNKTFFSWFMGIIVGEYLLRVI
PVGCHSYDLFISPEDVAKILEKSIAKTNILRGIFYNFVTRNFGFTNGLDIIMQCNQLKQI
NQF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g16764.t1 CDD cd02440 AdoMet_MTases 74 154 4.1e-06
7 g16764.t1 Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39 18 236 0.0e+00
2 g16764.t1 PANTHER PTHR43464 METHYLTRANSFERASE 9 97 0.0e+00
4 g16764.t1 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 9 97 0.0e+00
3 g16764.t1 PANTHER PTHR43464 METHYLTRANSFERASE 100 224 0.0e+00
5 g16764.t1 PANTHER PTHR43464:SF25 UBIQUINONE BIOSYNTHESIS O-METHYLTRANSFERASE, MITOCHONDRIAL 100 224 0.0e+00
1 g16764.t1 Pfam PF13489 Methyltransferase domain 67 163 0.0e+00
6 g16764.t1 SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases 31 203 0.0e+00
8 g16764.t1 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 103 225 0.0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity MF
GO:0006744 ubiquinone biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed