Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Bis(5’-nucleosyl)-tetraphosphatase [asymmetrical].

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16843 g16843.t2 TTS g16843.t2 11366720 11366720
chr_4 g16843 g16843.t2 isoform g16843.t2 11366750 11367355
chr_4 g16843 g16843.t2 exon g16843.t2.exon1 11366750 11367054
chr_4 g16843 g16843.t2 cds g16843.t2.CDS1 11366750 11367054
chr_4 g16843 g16843.t2 exon g16843.t2.exon2 11367235 11367355
chr_4 g16843 g16843.t2 cds g16843.t2.CDS2 11367235 11367355
chr_4 g16843 g16843.t2 TSS g16843.t2 11367443 11367443

Sequences

>g16843.t2 Gene=g16843 Length=426
ATGACAGCAAAAAGAGCAACAGGATTTTTAATTTATCGTTTGATATCAAATGAAATTCAA
TATTTATTAATGAAAGCTAGTTATGGAAATTTTCATTGGACACCACCAAAGGGTCATGTA
AGTGAATCAGATTATGAAACAGCACTTCGTGAAACTCATGAAGAAGCAGGCTATAATGAA
GATGATTTGATAATTTACAAAGATTTAAATAAAACTCTAAATTATCAAGTTAAAGGAAAA
CCAAAAGTTGTGATCTACTGGCTTGCTCAATTAAAAAATCCTCAGCATATGCCGACACTT
TCTGATGAACATACAGAATTTAAATTCTTGAATAAAAACGATGCAATTAAAATTTCTGGT
TACAAAGATTTTGCTGAAATGGTTGAATATTTTGATAAAGAAATAAGAAAAATTCATGGA
ATTTAA

>g16843.t2 Gene=g16843 Length=141
MTAKRATGFLIYRLISNEIQYLLMKASYGNFHWTPPKGHVSESDYETALRETHEEAGYNE
DDLIIYKDLNKTLNYQVKGKPKVVIYWLAQLKNPQHMPTLSDEHTEFKFLNKNDAIKISG
YKDFAEMVEYFDKEIRKIHGI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g16843.t2 CDD cd03428 Ap4A_hydrolase_human_like 3 133 0.000
9 g16843.t2 Gene3D G3DSA:3.90.79.10 Nucleoside Triphosphate Pyrophosphohydrolase 2 137 0.000
2 g16843.t2 PANTHER PTHR21340:SF0 BIS(5’-NUCLEOSYL)-TETRAPHOSPHATASE [ASYMMETRICAL] 4 135 0.000
3 g16843.t2 PANTHER PTHR21340 DIADENOSINE 5,5-P1,P4-TETRAPHOSPHATE PYROPHOSPHOHYDROLASE MUTT 4 135 0.000
5 g16843.t2 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 19 37 0.000
4 g16843.t2 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 62 83 0.000
6 g16843.t2 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 83 101 0.000
7 g16843.t2 PRINTS PR01405 Bis(5’-nucleosyl)-tetraphosphatase signature 103 121 0.000
1 g16843.t2 Pfam PF00293 NUDIX domain 6 129 0.000
10 g16843.t2 ProSiteProfiles PS51462 Nudix hydrolase domain profile. 2 135 10.312
8 g16843.t2 SUPERFAMILY SSF55811 Nudix 5 135 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF
GO:0008796 bis(5’-nucleosyl)-tetraphosphatase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed