General information for g16921.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphoacetylglucosamine mutase.
Parent gene
- The parent gene g16921 is located on chr_4: 11720440..11724075 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16921 | g16921.t4 | TSS | g16921.t4 | 11717148 | 11717148 |
| chr_4 | g16921 | g16921.t4 | isoform | g16921.t4 | 11717250 | 11720919 |
| chr_4 | g16921 | g16921.t4 | exon | g16921.t4.exon1 | 11717250 | 11717337 |
| chr_4 | g16921 | g16921.t4 | cds | g16921.t4.CDS1 | 11717250 | 11717337 |
| chr_4 | g16921 | g16921.t4 | exon | g16921.t4.exon2 | 11717407 | 11717428 |
| chr_4 | g16921 | g16921.t4 | cds | g16921.t4.CDS2 | 11717407 | 11717428 |
| chr_4 | g16921 | g16921.t4 | exon | g16921.t4.exon3 | 11719917 | 11720919 |
| chr_4 | g16921 | g16921.t4 | cds | g16921.t4.CDS3 | 11719917 | 11720919 |
| chr_4 | g16921 | g16921.t4 | TTS | g16921.t4 | NA | NA |
Sequences
>g16921.t4 Gene=g16921 Length=1113
ATGTCGTCGTCAGTTGATTTACGTACAGTTTATGCCTTTGCGCGTGAATTTCATTCAAAA
GGACCAAACATTGAAAAGTTACTTTATGGCACTGCTGGATTTCGTACACTACATGAAAAA
CTAGAATTCATAGCATTCAGAATGGGACTTTTAGCAACAATTCGATCAAGAAAATTTGGT
GGTCAAGCAATTGGTGTGATGATTACAGCATCACATAATCCTGAATGTGATAATGGTGTA
AAAATTATTGATCCAAAAGGTGAAATGTTAGAACGTGATTGGGAAACGATAGCAACAGAT
CTCGTAAATGTTCCTGATGATAGACTTGAATCAGAAGTAGCAAAAATTATTGCACAAGAA
AAAATTGATATGGGAGCACAATCAAATGTTTTTATTGGCATGGACACGCGTTATCATTCA
CCAGCAATGGGTCGTGCAGTTGTAAATGGTGTAAGAGCATTAAAAGGAAATCTTCGTGAT
TTTGGAATTCTCACGACACCAATGTTGCATTATCTTGTTTATACGCACAATGTCAGAGGT
GCTTATGGTTTTCCAACTGTCGATGGTTATGTCAGTAAACTTGTTAATGCATTTAAACGA
CTTCGTGGTGATGTTTATGAAAATGGAAATTATAAAAATTTTATTCTTTTCGATGGTGCC
AATGGAGTTGGCAGTTTGAAAATGCATGAATTTAATCGTCAACTTGGTCCATCACTTGAA
TGTCAAGTTTTTAATTCAAATGGAAAAATCAATCACAATTGTGGTGCAGATTTTGTAAAA
ACAAATCAAAGAGCACCTCATGGATTGCCAGAACATGAACCAAATACTCGTTGTGTCAGC
GTTGATGGCGATGCTGATAGAATTGTTTACTTTTTTACCGATTCTGATGGTGTTTTTCAT
TTACTTGATGGTGATCGTATTGCAACTTTAATTGCTGATTATCTCATGAATTTGGTTAAA
AAATGTGGAATAAGTTTAAAACTTGGAATTGTTCAAACAGCGTATGCCAATGGTGCATCG
ACTGATTATATTAAACAACAATTGAAAGTTGATGTTGCGTGTGTACCAACTGGAGTAAAA
CATCTGCATCATAAAGCATTGGAGTATGACATT
>g16921.t4 Gene=g16921 Length=371
MSSSVDLRTVYAFAREFHSKGPNIEKLLYGTAGFRTLHEKLEFIAFRMGLLATIRSRKFG
GQAIGVMITASHNPECDNGVKIIDPKGEMLERDWETIATDLVNVPDDRLESEVAKIIAQE
KIDMGAQSNVFIGMDTRYHSPAMGRAVVNGVRALKGNLRDFGILTTPMLHYLVYTHNVRG
AYGFPTVDGYVSKLVNAFKRLRGDVYENGNYKNFILFDGANGVGSLKMHEFNRQLGPSLE
CQVFNSNGKINHNCGADFVKTNQRAPHGLPEHEPNTRCVSVDGDADRIVYFFTDSDGVFH
LLDGDRIATLIADYLMNLVKKCGISLKLGIVQTAYANGASTDYIKQQLKVDVACVPTGVK
HLHHKALEYDI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g16921.t4 | Gene3D | G3DSA:1.10.490.170 | - | 7 | 182 | 5.9E-60 |
| 10 | g16921.t4 | Gene3D | G3DSA:3.40.120.10 | - | 187 | 324 | 4.3E-8 |
| 3 | g16921.t4 | PANTHER | PTHR45955:SF1 | PHOSPHOACETYLGLUCOSAMINE MUTASE | 18 | 371 | 4.4E-126 |
| 4 | g16921.t4 | PANTHER | PTHR45955 | PHOSPHOACETYLGLUCOSAMINE MUTASE | 18 | 371 | 4.4E-126 |
| 1 | g16921.t4 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 62 | 98 | 1.2E-7 |
| 2 | g16921.t4 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 114 | 180 | 2.0E-8 |
| 8 | g16921.t4 | ProSitePatterns | PS00710 | Phosphoglucomutase and phosphomannomutase phosphoserine signature. | 65 | 74 | - |
| 7 | g16921.t4 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 25 | 115 | 1.37E-13 |
| 6 | g16921.t4 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 118 | 206 | 5.49E-15 |
| 5 | g16921.t4 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 187 | 295 | 1.26E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed