General information for g16921.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphoacetylglucosamine mutase.
Parent gene
- The parent gene g16921 is located on chr_4: 11720440..11724075 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16921 | g16921.t5 | isoform | g16921.t5 | 11720440 | 11724075 |
| chr_4 | g16921 | g16921.t5 | exon | g16921.t5.exon1 | 11720440 | 11720920 |
| chr_4 | g16921 | g16921.t5 | cds | g16921.t5.CDS1 | 11720488 | 11720920 |
| chr_4 | g16921 | g16921.t5 | exon | g16921.t5.exon2 | 11723528 | 11724075 |
| chr_4 | g16921 | g16921.t5 | cds | g16921.t5.CDS2 | 11723528 | 11724075 |
| chr_4 | g16921 | g16921.t5 | TTS | g16921.t5 | 11724064 | 11724064 |
| chr_4 | g16921 | g16921.t5 | TSS | g16921.t5 | NA | NA |
Sequences
>g16921.t5 Gene=g16921 Length=1029
AAAAATTTTATTCTTTTCGATGGTGCCAATGGAGTTGGCAGTTTGAAAATGCATGAATTT
AATCGTCAACTTGGTCCATCACTTGAATGTCAAGTTTTTAATTCAAATGGAAAAATCAAT
CACAATTGTGGTGCAGATTTTGTAAAAACAAATCAAAGAGCACCTCATGGATTGCCAGAA
CATGAACCAAATACTCGTTGTGTCAGCGTTGATGGCGATGCTGATAGAATTGTTTACTTT
TTTACCGATTCTGATGGTGTTTTTCATTTACTTGATGGTGATCGTATTGCAACTTTAATT
GCTGATTATCTCATGAATTTGGTTAAAAAATGTGGAATAAGTTTAAAACTTGGAATTGTT
CAAACAGCGTATGCCAATGGTGCATCGACTGATTATATTAAACAACAATTGAAAGTTGAT
GTTGCGTGTGTACCAACTGGAGTAAAACATCTGCATCATAAAGCATTGGAGTATGACATT
GGTGTCTATTTCGAAGCGAATGGACATGGAACAGTAATTTTCAGTGACAGCACAAAAGAA
AAAATTTCATCCGCATCAAGATCAAATGAGACATCAAACGAACAAAAAGAGTCATTAAGA
AAACTTTTGTTAACTATCGATATAATAAATGAGACAGTTGGTGATGCCATATCGGATATG
CTTTTGGTTGAAACAATTCTTCATGCAAAAGGTTTTAGTCTAAAAGACTGGCTGGCGACA
TATGAAGATCTTCCAAATACAATTAAGAAAGTTAAAGTGCAAGATCGAAATATTTTTGAA
ACTACTGACGCTGAAAGAGTTTGTGTAAAACCAGATGGATTGCAAGATAAAATTGATGAA
TTAGTGCGGAAGTATAAAAGAGGTAGAGCATTTGTGAGGCCTTCAGGGACAGAAGATGTA
GTGCGTGTATATGCAGAAGCTGAAAATAATGATGATGTGCAGTTGTTGGCTGCTGAAGTT
TCAATATTAGTTTATGAAATGGCAAATGGCGTTGGAGAAAAACCTTCCATTCCACAACAA
AAATTATAA
>g16921.t5 Gene=g16921 Length=326
MHEFNRQLGPSLECQVFNSNGKINHNCGADFVKTNQRAPHGLPEHEPNTRCVSVDGDADR
IVYFFTDSDGVFHLLDGDRIATLIADYLMNLVKKCGISLKLGIVQTAYANGASTDYIKQQ
LKVDVACVPTGVKHLHHKALEYDIGVYFEANGHGTVIFSDSTKEKISSASRSNETSNEQK
ESLRKLLLTIDIINETVGDAISDMLLVETILHAKGFSLKDWLATYEDLPNTIKKVKVQDR
NIFETTDAERVCVKPDGLQDKIDELVRKYKRGRAFVRPSGTEDVVRVYAEAENNDDVQLL
AAEVSILVYEMANGVGEKPSIPQQKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16921.t5 | Gene3D | G3DSA:3.40.120.10 | - | 5 | 183 | 0.00e+00 |
| 9 | g16921.t5 | Gene3D | G3DSA:3.40.120.10 | - | 75 | 163 | 0.00e+00 |
| 7 | g16921.t5 | Gene3D | G3DSA:3.30.310.50 | Major birch pollen allergen Bet v 1 | 229 | 315 | 0.00e+00 |
| 3 | g16921.t5 | PANTHER | PTHR45955:SF1 | PHOSPHOACETYLGLUCOSAMINE MUTASE | 3 | 316 | 0.00e+00 |
| 4 | g16921.t5 | PANTHER | PTHR45955 | PHOSPHOACETYLGLUCOSAMINE MUTASE | 3 | 316 | 0.00e+00 |
| 1 | g16921.t5 | Pfam | PF02880 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | 76 | 187 | 3.40e-05 |
| 2 | g16921.t5 | Pfam | PF00408 | Phosphoglucomutase/phosphomannomutase, C-terminal domain | 254 | 305 | 0.00e+00 |
| 6 | g16921.t5 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 56 | 158 | 3.83e-05 |
| 5 | g16921.t5 | SUPERFAMILY | SSF55957 | Phosphoglucomutase, C-terminal domain | 217 | 320 | 0.00e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0071704 | organic substance metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
- This transcript has been annotated with K01836 (phosphoacetylglucosamine mutase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
