General information for g16958.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytosolic purine 5’-nucleotidase.
Parent gene
- The parent gene g16958 is located on chr_4: 11876297..11877993 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16958 | g16958.t12 | isoform | g16958.t12 | 11870692 | 11871765 |
| chr_4 | g16958 | g16958.t12 | exon | g16958.t12.exon1 | 11870692 | 11871264 |
| chr_4 | g16958 | g16958.t12 | cds | g16958.t12.CDS1 | 11870693 | 11871264 |
| chr_4 | g16958 | g16958.t12 | exon | g16958.t12.exon2 | 11871572 | 11871765 |
| chr_4 | g16958 | g16958.t12 | cds | g16958.t12.CDS2 | 11871572 | 11871728 |
| chr_4 | g16958 | g16958.t12 | TSS | g16958.t12 | NA | NA |
| chr_4 | g16958 | g16958.t12 | TTS | g16958.t12 | NA | NA |
Sequences
>g16958.t12 Gene=g16958 Length=767
TCGTTCTTTGCATTTGGAAAAAATAAAGTACATAGGAATGGATCTTGATTATACAATTGC
TGAATATAATTCACCACAATATGAAACACTTGGATTTGATTTAATTAAAGAACGACTTGT
TACAGTCGGTTATCCAGAGGAAATTTTAGAATTTCAATATGATCAGAGTTTTCCTATTCG
TGGATTGTGGTTTGATACTCTTTATGGAAATTTATTAAAAGTTGACGCCTATGGCAATAT
ACTTGTCTGTGTACATGGTTTCACTTTTCTAAAACCGCAAGCAATTTACGATTTGTATCC
AAACAAGTTCCTACAACTTGATGAATCACGAGTTTACGTTCTCAATACACTTTTCAATCT
TCCTGAAACTTATTTACTCGCATGTCTTGTTGACTTTTTCACAAATTCTCCACAATACCA
AAGTGAACGTACTGGAGTAAAAATTGGTGAACTTTTCATGTCTTTCCGTTCAATTTTTCA
AGATGTTCGTGGCGCTGTTGATTTTGTGCATTTACATGGCGATCTCAAGTCAAAAACTGT
TGAAAATCTCGATTATTATGTTAAAAAAGATTCACGTCTGCCATTGCTTTTAAATCGCAT
TCGTGGTTCAGGAATTAAAACTTTTTTGCTTACCAATAGTGACTACAATTTCACCAATAA
AATTATGACCTATCTTTTTGATTTTAATGAACGACCTGTTGGACTGAGTGATAATTTAAA
AGATCACAAAAATTGGCGATCGTACTTTGATGTGATTGTTGTTGATG
>g16958.t12 Gene=g16958 Length=243
MDLDYTIAEYNSPQYETLGFDLIKERLVTVGYPEEILEFQYDQSFPIRGLWFDTLYGNLL
KVDAYGNILVCVHGFTFLKPQAIYDLYPNKFLQLDESRVYVLNTLFNLPETYLLACLVDF
FTNSPQYQSERTGVKIGELFMSFRSIFQDVRGAVDFVHLHGDLKSKTVENLDYYVKKDSR
LPLLLNRIRGSGIKTFLLTNSDYNFTNKIMTYLFDFNERPVGLSDNLKDHKNWRSYFDVI
VVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16958.t12 | Gene3D | G3DSA:3.40.50.1000 | - | 160 | 243 | 0 |
| 2 | g16958.t12 | PANTHER | PTHR12103:SF17 | CYTOSOLIC PURINE 5’-NUCLEOTIDASE | 2 | 243 | 0 |
| 3 | g16958.t12 | PANTHER | PTHR12103 | 5’-NUCLEOTIDASE DOMAIN-CONTAINING | 2 | 243 | 0 |
| 1 | g16958.t12 | Pfam | PF05761 | 5’ nucleotidase family | 2 | 243 | 0 |
| 4 | g16958.t12 | SUPERFAMILY | SSF56784 | HAD-like | 2 | 243 | 0 |
| 6 | g16958.t12 | TIGRFAM | TIGR02244 | HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5’-nucleotidase | 2 | 243 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed