General information for g1697.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytochrome P450 9e2.
Parent gene
- The parent gene g1697 is located on chr_3: 12591648..12592765 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1697 | g1697.t1 | TTS | g1697.t1 | 12590765 | 12590765 |
| chr_3 | g1697 | g1697.t1 | isoform | g1697.t1 | 12591648 | 12592765 |
| chr_3 | g1697 | g1697.t1 | exon | g1697.t1.exon1 | 12591648 | 12592258 |
| chr_3 | g1697 | g1697.t1 | cds | g1697.t1.CDS1 | 12591648 | 12592258 |
| chr_3 | g1697 | g1697.t1 | exon | g1697.t1.exon2 | 12592321 | 12592499 |
| chr_3 | g1697 | g1697.t1 | cds | g1697.t1.CDS2 | 12592321 | 12592499 |
| chr_3 | g1697 | g1697.t1 | exon | g1697.t1.exon3 | 12592563 | 12592765 |
| chr_3 | g1697 | g1697.t1 | cds | g1697.t1.CDS3 | 12592563 | 12592765 |
| chr_3 | g1697 | g1697.t1 | TSS | g1697.t1 | 12592809 | 12592809 |
Sequences
>g1697.t1 Gene=g1697 Length=993
ATGGCTTTTTTAATTTATATTGTTTTGGCAATTTTAAGCTATATTGCTTATAAGAAGATC
ATACGAAACCATGATTATTTTGAGAAGAAAGGGTTAAAATTCAGTAAACCAATAGCTTTT
ATTGGTTCAAATAATTTGCTTTTGAAAAAATGTTCATTACCAGAGACAGTTCTCGCATGG
TACAATGAGTTTAAAAGTGAAAAAATTTACGGAATGTTCAATTTCATGAAACCAGTATTC
ATTATACGCGACCCACAAATAATTAAAAAATTGGCAGTTAAAGATTTTGATTTTTTCACT
GATCATCGTGTGATTATTTCTGAGGAAGTAGATCCGTTATTTGGAAAAGCTTTAATTTCT
TTACAAGGACAAAAATGGAAGGATATGCGTTCAACATTATCACCGGCATTCACAGGTCAT
AAAATGCGACTAATGTTTGATTTTGTGACTAAAGTAGGAAAACAAACAGCTGAGACACTG
AAGAGACAAGTTGATGAAGGTCGTAAGAATGATTTTGAGTTCAAAGAACTTGCGACGAAA
TTCACTGTTGATAATATTGCTTCTTGTGCTTTTGGGATATCGATAAATAGCTTTTCTAAT
CCTGAAAATGACTTCTTTGATATTGCAAAAAAGTTTGCAAACTTTGGTAATACTAAAACA
GTTTTGAAGTTCATTGGATATATGGTGATGCCATCAATCATGAAATTTTTCAAAATAAAA
GTGTTTGGTGCTAAAATAAGTAAATTTTTCAAAGAAGCTGTTTTGGATACTATAAAAGTG
AGAGAAGAAAAAGGAATAGTCAGACATGATATGATTAATCTTCTAATTCAAGCTAAGAAA
GGCACTTTAGTGCATGAAATTGAAGAAAAATTAATAGAAGGATTTGCAACAGTTGAAGAG
TCACAAATGGGAAAAATTCAATCAAAGAGAAAATGGGATGATGAAGACCTTGCAGCACAA
GCTTTCATCTTTTTCCTAGCTTTAAGTTTTTAA
>g1697.t1 Gene=g1697 Length=330
MAFLIYIVLAILSYIAYKKIIRNHDYFEKKGLKFSKPIAFIGSNNLLLKKCSLPETVLAW
YNEFKSEKIYGMFNFMKPVFIIRDPQIIKKLAVKDFDFFTDHRVIISEEVDPLFGKALIS
LQGQKWKDMRSTLSPAFTGHKMRLMFDFVTKVGKQTAETLKRQVDEGRKNDFEFKELATK
FTVDNIASCAFGISINSFSNPENDFFDIAKKFANFGNTKTVLKFIGYMVMPSIMKFFKIK
VFGAKISKFFKEAVLDTIKVREEKGIVRHDMINLLIQAKKGTLVHEIEEKLIEGFATVEE
SQMGKIQSKRKWDDEDLAAQAFIFFLALSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1697.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 15 | 329 | 2.5E-52 |
| 2 | g1697.t1 | PANTHER | PTHR24292 | CYTOCHROME P450 | 4 | 327 | 1.0E-86 |
| 3 | g1697.t1 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 4 | 327 | 1.0E-86 |
| 5 | g1697.t1 | PRINTS | PR00464 | Group II E-class P450 signature | 123 | 143 | 3.6E-9 |
| 4 | g1697.t1 | PRINTS | PR00464 | Group II E-class P450 signature | 180 | 198 | 3.6E-9 |
| 1 | g1697.t1 | Pfam | PF00067 | Cytochrome P450 | 64 | 326 | 7.1E-20 |
| 9 | g1697.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 18 | - |
| 10 | g1697.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 11 | g1697.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 13 | - |
| 12 | g1697.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 14 | 18 | - |
| 8 | g1697.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 19 | 330 | - |
| 6 | g1697.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 37 | 327 | 9.3E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0004497 | monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
