General information for g1699.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cytochrome P450 9e2.
Parent gene
- The parent gene g1699 is located on chr_3: 12594110..12595235 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1699 | g1699.t1 | isoform | g1699.t1 | 12594110 | 12595235 |
| chr_3 | g1699 | g1699.t1 | exon | g1699.t1.exon1 | 12594110 | 12594729 |
| chr_3 | g1699 | g1699.t1 | cds | g1699.t1.CDS1 | 12594110 | 12594729 |
| chr_3 | g1699 | g1699.t1 | exon | g1699.t1.exon2 | 12594788 | 12594966 |
| chr_3 | g1699 | g1699.t1 | cds | g1699.t1.CDS2 | 12594788 | 12594966 |
| chr_3 | g1699 | g1699.t1 | exon | g1699.t1.exon3 | 12595027 | 12595235 |
| chr_3 | g1699 | g1699.t1 | cds | g1699.t1.CDS3 | 12595027 | 12595235 |
| chr_3 | g1699 | g1699.t1 | TSS | g1699.t1 | 12595266 | 12595266 |
| chr_3 | g1699 | g1699.t1 | TTS | g1699.t1 | NA | NA |
Sequences
>g1699.t1 Gene=g1699 Length=1008
ATGGGTCTTTTTATGTGTTTGATTATATTAGCTGCTACTTTGATTGCATATAAACTTCTT
TTTGCCGGAAAAAATAAAAACTATTTCCTAAAGAAAGGAGTTAAATATGAGAAGCAAAAT
GTTCTTATAGCTATAAAAAATATGTTCACTCAGAAAAAATCATTTCCTGAAATTGCGAAT
GGCTGGTATAATGATTTTAAAGAAGAAAAAATATCGGGTATTTTTGAATTTTCAAGGCCA
ATTTTTATCATACGCGACCCACAACTGATTAAGAGAATGACAGTTAAAGATTTTGATTTT
TTTACTGATCATCGTGTGATCATTACTGAAAATAATGATATATTATTGGGGAAATCTTTG
ATTTCCTTATGTGGACAAAAATGGAAAGATATGCGTTCAACGTTATCACCGGCATTCACA
GGTCATAAAATGCGACTGATGTTTGATTTTGTTGCAACTGTTGGAAAACAAACTGTTGAA
ACCTTGAAAAAGCAAATTAACGAAGGTCATGGAAATGATTTTGAATTTAAAGAGCTTGCG
ACGAAATTCACTGTCGATAATATTGCTTCATGCGCTTTTGGGATATCGGTAAACAGTTTT
TCTGATCCCAAAAACGATTTTCATCGTATTGCAAATGAATTAACAGATTTTCAAAATTTC
AAGTCTATTATGAAATTTATGGGCTATTTGATAGTACCATGGTTAATGAATTTTTTCAAG
ATAAGCTTTTTCAGTGAAAAAGTGAGTAAATTCTTTGAAGAGGCGATTTTGGATACTATG
AAGATTAGAGAAGAAAAAGGAATAGTCAGACATGATATGATTAATCTTCTAATTCAAGCT
AAGAAAGGCACTTTAGTGCATGAAATTGAAGAAAAATTAATAGAAGGATTTGCAACAGTT
GAAGAGTCACAAATGGGAAAAACTCAATCAAAGAGAAAATGGGATGATGTAGACTTAGCT
GCACAAGCTTTCATCTTTTTCTTTGCTTTAAGTATCAAATCTTTCTAA
>g1699.t1 Gene=g1699 Length=335
MGLFMCLIILAATLIAYKLLFAGKNKNYFLKKGVKYEKQNVLIAIKNMFTQKKSFPEIAN
GWYNDFKEEKISGIFEFSRPIFIIRDPQLIKRMTVKDFDFFTDHRVIITENNDILLGKSL
ISLCGQKWKDMRSTLSPAFTGHKMRLMFDFVATVGKQTVETLKKQINEGHGNDFEFKELA
TKFTVDNIASCAFGISVNSFSDPKNDFHRIANELTDFQNFKSIMKFMGYLIVPWLMNFFK
ISFFSEKVSKFFEEAILDTMKIREEKGIVRHDMINLLIQAKKGTLVHEIEEKLIEGFATV
EESQMGKTQSKRKWDDVDLAAQAFIFFFALSIKSF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g1699.t1 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 18 | 331 | 2.7E-50 |
| 2 | g1699.t1 | PANTHER | PTHR24292 | CYTOCHROME P450 | 5 | 329 | 9.9E-89 |
| 3 | g1699.t1 | PANTHER | PTHR24292:SF90 | CYTOCHROME P450 317A1-RELATED | 5 | 329 | 9.9E-89 |
| 4 | g1699.t1 | PRINTS | PR00464 | Group II E-class P450 signature | 125 | 145 | 3.0E-9 |
| 5 | g1699.t1 | PRINTS | PR00464 | Group II E-class P450 signature | 182 | 200 | 3.0E-9 |
| 1 | g1699.t1 | Pfam | PF00067 | Cytochrome P450 | 69 | 290 | 1.0E-20 |
| 9 | g1699.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 10 | g1699.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 11 | g1699.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 17 | - |
| 12 | g1699.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 8 | g1699.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 335 | - |
| 6 | g1699.t1 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 47 | 329 | 8.38E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0004497 | monooxygenase activity | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
