General information for g1702.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger FYVE domain-containing protein 9.
Parent gene
- The parent gene g1702 is located on chr_3: 12607093..12607972 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1702 | g1702.t1 | TSS | g1702.t1 | 12603781 | 12603781 |
| chr_3 | g1702 | g1702.t1 | isoform | g1702.t1 | 12603892 | 12607972 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon1 | 12603892 | 12604195 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS1 | 12603892 | 12604195 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon2 | 12604319 | 12606169 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS2 | 12604319 | 12606169 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon3 | 12606231 | 12606464 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS3 | 12606231 | 12606464 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon4 | 12606530 | 12606638 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS4 | 12606530 | 12606638 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon5 | 12606703 | 12606806 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS5 | 12606703 | 12606806 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon6 | 12606873 | 12607035 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS6 | 12606873 | 12607035 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon7 | 12607093 | 12607756 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS7 | 12607093 | 12607756 |
| chr_3 | g1702 | g1702.t1 | exon | g1702.t1.exon8 | 12607814 | 12607972 |
| chr_3 | g1702 | g1702.t1 | cds | g1702.t1.CDS8 | 12607814 | 12607972 |
| chr_3 | g1702 | g1702.t1 | TTS | g1702.t1 | 12608083 | 12608083 |
Sequences
>g1702.t1 Gene=g1702 Length=3588
ATGGCAACAGAAGATAAAAAGCAGTTGTTTATTTTCGACATAGATTCTGCTCTAGATTGT
CTTGAAAATGAATTAAATTTAAATGAAGAAAATAGTAATGCAATACAAAGTCAACATAAA
AATATTGAAAATACAAAGCAAACTCAAGATCAGAATTTCAAAAGTACAGATCAGCACGAA
GAGAATGGTAATATTTCAACAACGACGACGTCAATAAATACTACAAATAACAATAATGAT
GAGATAATTTCTGCAAGTGAACAAGTTACTACTATCGACAACAACAAAGACGAGAATGAA
CGCATATTATCGATAAATCAGTTATCAGAAGATTTGCAAGAGAAATTACCTAATAATTCT
GTTCTTAATAATCAAAATAATGTGACCACCACTACCACAGAGACGAAAGAGGATATAAAT
AACTTTAAACCTGAAATTGAATTGAACGATAATAGTCACAATCAACAGTCAATAAGCATT
GAAGAGAAAAATACGAGTAGTGTAGAAATAAATTCTTCATCAACTGATACAACTGCATCA
TCATCATCATCATCATCATCTAATAGTGAAACCGGAAATATCTATGAACGGAATAATACA
GATGATTCATCTAAACGTCTAATTAGTGAAGAATCTTCAAATCAAAATGATGTTCGAGAG
ATAAGTGTAAAGGAAGACAATGAAATTTTAGATGATGATCAGCCAATTACAACTGATTTA
ACGTTGACAAAAACTGTTCAATTAACTGAATTCGATCAAGAACCTGTAATAGAATTTAAT
GATGATGAACCAAACAAAACTGTAGAAATCGAAAATAATAATGTTCAGGAACCGGTTGTC
CAAGAAAAAATGATAGAAGAGCCAATTGATAATATAAGAGAAATGTCACATAATTATGAA
TCGACTATGGACGATATTTCAGACGCTGAGCTAGAATCGCTCGAACAAGAACTTGATGAT
TTAGTTGCAGCTGCTGCAGCCGAAGAAGCAAACTTAGATCGAATCATAGAAGAGAATGAA
ATCAAAGATATTGAAGAGTCAATCGAAAAAACTGTTGAAACTGACGATAAAAAGGATGAA
AAAGAAAATACCGAAGAGGCTATTGTTGAACAGCCAAACGACAGTAAAGTAGGAACTGAG
GAATCTGTAGTAACTGTTGAAGAAAAAGAAATTGATATATCTAAAAAAGAAAATGAACCG
AAAGAAGAAAGTGCCAAAGTTAGTGAAATAGTTGAAGTGATAGAACCGGAAGTAACTTCT
GTAATCGAAAATGATCAACCAGAATCAGTTTCAGAAGCGCAAGAAGCCATTGAACCACCA
TCATCTCCTCAAATTGTGCCACCATCATCTCCCGATCCTGCACTCTCAACGAGCTCAACT
GACGAATCAGCTTCAATTCAAAATTTACCGTCACAATCAAATGAAGATTTTTCAGTAAAT
GAATCAAATTCTACGGGAAGTTTAACATCGGAACCAAAACATGGCTCTGTCCCGCCTTAT
TGGATTCCAGATGAAATGACTAATGCATGCATGCAATGTGATCAGAAATTCTCACTTATA
AAGCGCCGTCATCATTGCCGAGCGTGCGGACTATTATTGTGTTCCAGCTGTTGTAACGAA
AAATTCTATCTTTATTATTTGAAAAGCGAGGGAAGAATTTGTAAACCGTGTCATGATATT
TTGTTAAAGGCACAACAACCAAAAAATCCAAATCCTGCAAATCCTTTGGAATATTGCAGT
ACAATTCCCATTCAACAGCAAGTTAATACATCACAACAACAGCCTATTGTAATGGTTCCG
ACAGGCGTTCTTAAAAGACCTTCAGGAAGTCGTACATCGGAACGCAAAAGTGTGATTTTT
AGTGACGGAATACGTCCTGGCACAGATCTTGACGATACATTCAATAATACCTCAACATCA
ACATCTCGAGCAGCAGAACCTTCAGAAAAACCTAAATTTAACTATTTACCAACACTTAAT
GAGAAAAATAACAGCTTTATTTCTGAGTCTGCTAACGAATTGCCGCCTATTCTCTTTAAA
GATAGCGAGTACAAGTATGTCGACAATAATCTTACGCTTTTGCAGCGATTAAGGCAAGAA
GAGTTAAAGTTTGTTATCAACAAAAATTTTTATGTTACTGTTAAAATTGTCACATTAACC
TGTTGCACGAATAAAACTGTAATAAATTTCTCAACTTCGGGCTTGTTAGCTGTGCGTCAA
GATGAAATCATGATATTGCTTGAATTGAATGATGATATGCATAATATACCGAAAGAAGTA
TTTTTACATTTGAATGAAATTTACAGCAAAGCTGATAAAAGTAATGTGATTATCAAAGAG
TATGGTTATAGTCAGTTGTCAACGAGTAACTTTTTGGGAGCATTTGGAGGTTTCTTATAC
ATTAAACCAACATTTCAATGTTTGCAAAGTTTGACTTGCCCAGAAAGTCCTTATTTAATT
GGTTTACTTGTTCACAAATGGGAAGTTCCTTGGATGAGATTGTTTCCACTCAGACTAATT
TTACGATTAGGAGCGCTTTATCGTTATTATCCAACACCAATTTTATCAAATGTTAATCGT
GAACCTGTTTTTGCAGAAATCGGAAACACAATTATGAACTTTTTGGTTGATTTTAGAAAT
TTTTCATACACAATTGAGATAATTAAGGGTCTAAACATTCATATGGAAGAGAGAAAAACC
TCAGTTTTTATTCCACGAAATCGCTACGATCAGATTATGAAAGTTATTAATAATTCAACG
GAACACTTATTAGCTTTCGGTGCAGATTTTAGTCGTCAAGCAGATGGACATTTGGTGTGC
ATACAAAATATTGATTCAGGCTCATCTGAATCGTTATCGTACTCAACACAGGCAATAAAT
ATTCAAGGTCAAAATCGTATTAGAACAGGTGCAAGCTTTCTTATTCTAAATGGTGCATTA
AAACAAAGTAGCGGATTGAAAGGGAAATGTTCAATTGTTGAAGATGGTCTTATGATACAA
ATATTTTCAACTAAAATGCAAAGTATTCGCGATGCATTAAAAAATATGAAGAATATTGAT
ATACCGTGTGGACCGATCGATGATGAGCAGAAAGAGGCAGAAGAGGTTGTGACAATTGAG
TGGGTTAATGATGATATGAGCATAAATTTGGGGGTTACTTCTCCTATCGATGATCTTTCA
TTAGAAGGCAAAGAAAATATTAGAACGCGTTTGGACATAACAAGTCAAAGTCATTCAAAA
ATATTGCGATGGTCTGAAGTGTTTTTATTAGAAGTTGATGATGCACCAGTTACTGATGAT
CATTTAAATTATACAAAAGTATGTGAGCCAATCGCAAAAGCTTGTGGAAATGCACTACTA
CCATTTTTGGATTTGATGGCAGTTAATCAATTAAGAAAGATAGGAATTCGCGTTACTCTT
GGTGAAAATATAAAATATTTGGCTGGATCTAACAAGCTTTTGTTCTCACCAATTTATATG
AATGCATTGGATAACGAATTGATTGGAGTGATTCATCGTCAGGCTAGCAATTTATCAAGA
GACTCAAACATTACGATGGAATTAATATTTTATATTTTGAACAAGTAG
>g1702.t1 Gene=g1702 Length=1195
MATEDKKQLFIFDIDSALDCLENELNLNEENSNAIQSQHKNIENTKQTQDQNFKSTDQHE
ENGNISTTTTSINTTNNNNDEIISASEQVTTIDNNKDENERILSINQLSEDLQEKLPNNS
VLNNQNNVTTTTTETKEDINNFKPEIELNDNSHNQQSISIEEKNTSSVEINSSSTDTTAS
SSSSSSSNSETGNIYERNNTDDSSKRLISEESSNQNDVREISVKEDNEILDDDQPITTDL
TLTKTVQLTEFDQEPVIEFNDDEPNKTVEIENNNVQEPVVQEKMIEEPIDNIREMSHNYE
STMDDISDAELESLEQELDDLVAAAAAEEANLDRIIEENEIKDIEESIEKTVETDDKKDE
KENTEEAIVEQPNDSKVGTEESVVTVEEKEIDISKKENEPKEESAKVSEIVEVIEPEVTS
VIENDQPESVSEAQEAIEPPSSPQIVPPSSPDPALSTSSTDESASIQNLPSQSNEDFSVN
ESNSTGSLTSEPKHGSVPPYWIPDEMTNACMQCDQKFSLIKRRHHCRACGLLLCSSCCNE
KFYLYYLKSEGRICKPCHDILLKAQQPKNPNPANPLEYCSTIPIQQQVNTSQQQPIVMVP
TGVLKRPSGSRTSERKSVIFSDGIRPGTDLDDTFNNTSTSTSRAAEPSEKPKFNYLPTLN
EKNNSFISESANELPPILFKDSEYKYVDNNLTLLQRLRQEELKFVINKNFYVTVKIVTLT
CCTNKTVINFSTSGLLAVRQDEIMILLELNDDMHNIPKEVFLHLNEIYSKADKSNVIIKE
YGYSQLSTSNFLGAFGGFLYIKPTFQCLQSLTCPESPYLIGLLVHKWEVPWMRLFPLRLI
LRLGALYRYYPTPILSNVNREPVFAEIGNTIMNFLVDFRNFSYTIEIIKGLNIHMEERKT
SVFIPRNRYDQIMKVINNSTEHLLAFGADFSRQADGHLVCIQNIDSGSSESLSYSTQAIN
IQGQNRIRTGASFLILNGALKQSSGLKGKCSIVEDGLMIQIFSTKMQSIRDALKNMKNID
IPCGPIDDEQKEAEEVVTIEWVNDDMSINLGVTSPIDDLSLEGKENIRTRLDITSQSHSK
ILRWSEVFLLEVDDAPVTDDHLNYTKVCEPIAKACGNALLPFLDLMAVNQLRKIGIRVTL
GENIKYLAGSNKLLFSPIYMNALDNELIGVIHRQASNLSRDSNITMELIFYILNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g1702.t1 | CDD | cd15729 | FYVE_endofin | 495 | 561 | 3.42606E-35 |
| 12 | g1702.t1 | Coils | Coil | Coil | 18 | 38 | - |
| 14 | g1702.t1 | Coils | Coil | Coil | 95 | 115 | - |
| 13 | g1702.t1 | Coils | Coil | Coil | 292 | 347 | - |
| 11 | g1702.t1 | Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain | 490 | 570 | 9.5E-25 |
| 10 | g1702.t1 | Gene3D | G3DSA:4.10.720.10 | Smad Anchor For Receptor Activation; Chain B | 571 | 603 | 4.4E-9 |
| 7 | g1702.t1 | Gene3D | G3DSA:3.30.1360.220 | - | 885 | 943 | 7.1E-13 |
| 8 | g1702.t1 | Gene3D | G3DSA:3.30.1360.220 | - | 944 | 1045 | 3.7E-29 |
| 9 | g1702.t1 | Gene3D | G3DSA:3.30.500.40 | - | 1046 | 1195 | 2.8E-41 |
| 24 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 72 | - |
| 22 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 140 | - |
| 28 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 137 | - |
| 21 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 198 | - |
| 23 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 234 | - |
| 20 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 231 | - |
| 19 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 495 | - |
| 27 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 369 | - |
| 29 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 410 | - |
| 26 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 438 | - |
| 18 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 492 | - |
| 17 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 647 | - |
| 25 | g1702.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 630 | 650 | - |
| 4 | g1702.t1 | PANTHER | PTHR46319:SF3 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN | 27 | 1194 | 8.4E-296 |
| 5 | g1702.t1 | PANTHER | PTHR46319 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN | 27 | 1194 | 8.4E-296 |
| 2 | g1702.t1 | Pfam | PF01363 | FYVE zinc finger | 500 | 561 | 9.8E-17 |
| 3 | g1702.t1 | Pfam | PF11409 | Smad anchor for receptor activation (SARA) | 569 | 603 | 3.2E-11 |
| 1 | g1702.t1 | Pfam | PF11979 | Domain of unknown function (DUF3480) | 814 | 1171 | 4.5E-136 |
| 30 | g1702.t1 | ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 504 | 562 | 11.914 |
| 16 | g1702.t1 | SMART | SM00064 | fyve_4 | 496 | 563 | 3.7E-26 |
| 6 | g1702.t1 | SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 499 | 570 | 5.28E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046872 | metal ion binding | MF |
KEGG
Orthology
- This transcript has been annotated with K04679 (MAD, mothers against decapentaplegic interacting protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
