General information for g1702.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger FYVE domain-containing protein 9.
Parent gene
- The parent gene g1702 is located on chr_3: 12607093..12607972 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1702 | g1702.t3 | isoform | g1702.t3 | 12606129 | 12607972 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon1 | 12606129 | 12606169 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon2 | 12606231 | 12606464 |
| chr_3 | g1702 | g1702.t3 | cds | g1702.t3.CDS1 | 12606305 | 12606464 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon3 | 12606530 | 12606638 |
| chr_3 | g1702 | g1702.t3 | cds | g1702.t3.CDS2 | 12606530 | 12606638 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon4 | 12606703 | 12606806 |
| chr_3 | g1702 | g1702.t3 | cds | g1702.t3.CDS3 | 12606703 | 12606806 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon5 | 12606873 | 12607035 |
| chr_3 | g1702 | g1702.t3 | cds | g1702.t3.CDS4 | 12606873 | 12607035 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon6 | 12607093 | 12607756 |
| chr_3 | g1702 | g1702.t3 | cds | g1702.t3.CDS5 | 12607093 | 12607756 |
| chr_3 | g1702 | g1702.t3 | exon | g1702.t3.exon7 | 12607814 | 12607972 |
| chr_3 | g1702 | g1702.t3 | cds | g1702.t3.CDS6 | 12607814 | 12607972 |
| chr_3 | g1702 | g1702.t3 | TTS | g1702.t3 | 12608083 | 12608083 |
| chr_3 | g1702 | g1702.t3 | TSS | g1702.t3 | NA | NA |
Sequences
>g1702.t3 Gene=g1702 Length=1474
TATCAACAAAAATTTTTATGTTACTGTTAAAATTGTCACATTAACCTGTTGCACGAATAA
AACTGTAATAAATTTCTCAACTTCGGGCTTGTTAGCTGTGCGTCAAGATGAAATCATGAT
ATTGCTTGAATTGAATGATGATATGCATAATATACCGAAAGAAGTATTTTTACATTTGAA
TGAAATTTACAGCAAAGCTGATAAAAGTAATGTGATTATCAAAGAGTATGGTTATAGTCA
GTTGTCAACGAGTAACTTTTTGGGAGCATTTGGAGGTTTCTTATACATTAAACCAACATT
TCAATGTTTGCAAAGTTTGACTTGCCCAGAAAGTCCTTATTTAATTGGTTTACTTGTTCA
CAAATGGGAAGTTCCTTGGATGAGATTGTTTCCACTCAGACTAATTTTACGATTAGGAGC
GCTTTATCGTTATTATCCAACACCAATTTTATCAAATGTTAATCGTGAACCTGTTTTTGC
AGAAATCGGAAACACAATTATGAACTTTTTGGTTGATTTTAGAAATTTTTCATACACAAT
TGAGATAATTAAGGGTCTAAACATTCATATGGAAGAGAGAAAAACCTCAGTTTTTATTCC
ACGAAATCGCTACGATCAGATTATGAAAGTTATTAATAATTCAACGGAACACTTATTAGC
TTTCGGTGCAGATTTTAGTCGTCAAGCAGATGGACATTTGGTGTGCATACAAAATATTGA
TTCAGGCTCATCTGAATCGTTATCGTACTCAACACAGGCAATAAATATTCAAGGTCAAAA
TCGTATTAGAACAGGTGCAAGCTTTCTTATTCTAAATGGTGCATTAAAACAAAGTAGCGG
ATTGAAAGGGAAATGTTCAATTGTTGAAGATGGTCTTATGATACAAATATTTTCAACTAA
AATGCAAAGTATTCGCGATGCATTAAAAAATATGAAGAATATTGATATACCGTGTGGACC
GATCGATGATGAGCAGAAAGAGGCAGAAGAGGTTGTGACAATTGAGTGGGTTAATGATGA
TATGAGCATAAATTTGGGGGTTACTTCTCCTATCGATGATCTTTCATTAGAAGGCAAAGA
AAATATTAGAACGCGTTTGGACATAACAAGTCAAAGTCATTCAAAAATATTGCGATGGTC
TGAAGTGTTTTTATTAGAAGTTGATGATGCACCAGTTACTGATGATCATTTAAATTATAC
AAAAGTATGTGAGCCAATCGCAAAAGCTTGTGGAAATGCACTACTACCATTTTTGGATTT
GATGGCAGTTAATCAATTAAGAAAGATAGGAATTCGCGTTACTCTTGGTGAAAATATAAA
ATATTTGGCTGGATCTAACAAGCTTTTGTTCTCACCAATTTATATGAATGCATTGGATAA
CGAATTGATTGGAGTGATTCATCGTCAGGCTAGCAATTTATCAAGAGACTCAAACATTAC
GATGGAATTAATATTTTATATTTTGAACAAGTAG
>g1702.t3 Gene=g1702 Length=452
MILLELNDDMHNIPKEVFLHLNEIYSKADKSNVIIKEYGYSQLSTSNFLGAFGGFLYIKP
TFQCLQSLTCPESPYLIGLLVHKWEVPWMRLFPLRLILRLGALYRYYPTPILSNVNREPV
FAEIGNTIMNFLVDFRNFSYTIEIIKGLNIHMEERKTSVFIPRNRYDQIMKVINNSTEHL
LAFGADFSRQADGHLVCIQNIDSGSSESLSYSTQAINIQGQNRIRTGASFLILNGALKQS
SGLKGKCSIVEDGLMIQIFSTKMQSIRDALKNMKNIDIPCGPIDDEQKEAEEVVTIEWVN
DDMSINLGVTSPIDDLSLEGKENIRTRLDITSQSHSKILRWSEVFLLEVDDAPVTDDHLN
YTKVCEPIAKACGNALLPFLDLMAVNQLRKIGIRVTLGENIKYLAGSNKLLFSPIYMNAL
DNELIGVIHRQASNLSRDSNITMELIFYILNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g1702.t3 | Gene3D | G3DSA:3.30.1360.220 | - | 142 | 200 | 0 |
| 3 | g1702.t3 | Gene3D | G3DSA:3.30.1360.220 | - | 203 | 302 | 0 |
| 5 | g1702.t3 | Gene3D | G3DSA:3.30.500.40 | - | 303 | 452 | 0 |
| 2 | g1702.t3 | PANTHER | PTHR46319 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN | 1 | 451 | 0 |
| 1 | g1702.t3 | Pfam | PF11979 | Domain of unknown function (DUF3480) | 71 | 428 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
