General information for g1702.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger FYVE domain-containing protein 9.
Parent gene
- The parent gene g1702 is located on chr_3: 12607093..12607972 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1702 | g1702.t4 | isoform | g1702.t4 | 12607093 | 12607972 |
| chr_3 | g1702 | g1702.t4 | exon | g1702.t4.exon1 | 12607093 | 12607756 |
| chr_3 | g1702 | g1702.t4 | cds | g1702.t4.CDS1 | 12607319 | 12607756 |
| chr_3 | g1702 | g1702.t4 | exon | g1702.t4.exon2 | 12607814 | 12607972 |
| chr_3 | g1702 | g1702.t4 | cds | g1702.t4.CDS2 | 12607814 | 12607972 |
| chr_3 | g1702 | g1702.t4 | TTS | g1702.t4 | 12608083 | 12608083 |
| chr_3 | g1702 | g1702.t4 | TSS | g1702.t4 | NA | NA |
Sequences
>g1702.t4 Gene=g1702 Length=823
CTTATTAGCTTTCGGTGCAGATTTTAGTCGTCAAGCAGATGGACATTTGGTGTGCATACA
AAATATTGATTCAGGCTCATCTGAATCGTTATCGTACTCAACACAGGCAATAAATATTCA
AGGTCAAAATCGTATTAGAACAGGTGCAAGCTTTCTTATTCTAAATGGTGCATTAAAACA
AAGTAGCGGATTGAAAGGGAAATGTTCAATTGTTGAAGATGGTCTTATGATACAAATATT
TTCAACTAAAATGCAAAGTATTCGCGATGCATTAAAAAATATGAAGAATATTGATATACC
GTGTGGACCGATCGATGATGAGCAGAAAGAGGCAGAAGAGGTTGTGACAATTGAGTGGGT
TAATGATGATATGAGCATAAATTTGGGGGTTACTTCTCCTATCGATGATCTTTCATTAGA
AGGCAAAGAAAATATTAGAACGCGTTTGGACATAACAAGTCAAAGTCATTCAAAAATATT
GCGATGGTCTGAAGTGTTTTTATTAGAAGTTGATGATGCACCAGTTACTGATGATCATTT
AAATTATACAAAAGTATGTGAGCCAATCGCAAAAGCTTGTGGAAATGCACTACTACCATT
TTTGGATTTGATGGCAGTTAATCAATTAAGAAAGATAGGAATTCGCGTTACTCTTGGTGA
AAATATAAAATATTTGGCTGGATCTAACAAGCTTTTGTTCTCACCAATTTATATGAATGC
ATTGGATAACGAATTGATTGGAGTGATTCATCGTCAGGCTAGCAATTTATCAAGAGACTC
AAACATTACGATGGAATTAATATTTTATATTTTGAACAAGTAG
>g1702.t4 Gene=g1702 Length=198
MIQIFSTKMQSIRDALKNMKNIDIPCGPIDDEQKEAEEVVTIEWVNDDMSINLGVTSPID
DLSLEGKENIRTRLDITSQSHSKILRWSEVFLLEVDDAPVTDDHLNYTKVCEPIAKACGN
ALLPFLDLMAVNQLRKIGIRVTLGENIKYLAGSNKLLFSPIYMNALDNELIGVIHRQASN
LSRDSNITMELIFYILNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g1702.t4 | Gene3D | G3DSA:3.30.1360.220 | - | 1 | 48 | 0 |
| 4 | g1702.t4 | Gene3D | G3DSA:3.30.500.40 | - | 49 | 198 | 0 |
| 2 | g1702.t4 | PANTHER | PTHR46319 | ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN | 1 | 197 | 0 |
| 1 | g1702.t4 | Pfam | PF11979 | Domain of unknown function (DUF3480) | 1 | 174 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
