General information for g17054.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Heat shock protein 23.
Parent gene
- The parent gene g17054 is located on chr_4: 12324809..12327543 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g17054 | g17054.t1 | TTS | g17054.t1 | 12324668 | 12324668 |
| chr_4 | g17054 | g17054.t1 | isoform | g17054.t1 | 12324809 | 12325486 |
| chr_4 | g17054 | g17054.t1 | exon | g17054.t1.exon1 | 12324809 | 12325332 |
| chr_4 | g17054 | g17054.t1 | cds | g17054.t1.CDS1 | 12324809 | 12325332 |
| chr_4 | g17054 | g17054.t1 | exon | g17054.t1.exon2 | 12325432 | 12325486 |
| chr_4 | g17054 | g17054.t1 | cds | g17054.t1.CDS2 | 12325432 | 12325486 |
| chr_4 | g17054 | g17054.t1 | TSS | g17054.t1 | 12325634 | 12325634 |
Sequences
>g17054.t1 Gene=g17054 Length=579
ATGGCAAATCTTATTCGTGCACTTTCACTTCTTGATGATCCATTTTATTCATATGAAACG
GAGCCAAGATTTGGTTTGGGTTTAATTCCAAGTGATTTCTTCTCTGATCGAATTGTTCCA
CGTACTGCATTGCATTATCATTTACCTACTGGCTACTATCGTCCGTGGCAAATGGCTCGT
CAAGCAATGTCTGAATTGAACAAAGATCAAAAGTCATTGCAATTAGGCAAAGAAGGATTC
CAAGCTTGTGTTGATGTTCAACACTTTAAACCAAATGAAATCTCTGTCAAAGTTCAAGAT
CACACTGTCATAATTGAAGGAAAGCATGAAGAACGAGATGATGCACATGGAACCATTGAA
AGAAGTTTTGTTCGCAAATATGTGTTGCCACAAGAATATGACATGAATACAGTTCAATCG
ACTTTGTCAAGTGATGGAGTTTTGACTATCAAGGCACCACCACCACAAGCTATTGATGGA
CCTAAGGAAAGAAATATTGAAATCACTCATACAAATGCACCAGCTCGTGAAAGTATTAAA
GAAAACAAGTCTGAAGAGAAACAAGCCAATCAAAAATAA
>g17054.t1 Gene=g17054 Length=192
MANLIRALSLLDDPFYSYETEPRFGLGLIPSDFFSDRIVPRTALHYHLPTGYYRPWQMAR
QAMSELNKDQKSLQLGKEGFQACVDVQHFKPNEISVKVQDHTVIIEGKHEERDDAHGTIE
RSFVRKYVLPQEYDMNTVQSTLSSDGVLTIKAPPPQAIDGPKERNIEITHTNAPARESIK
ENKSEEKQANQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g17054.t1 | CDD | cd06526 | metazoan_ACD | 76 | 153 | 2.95225E-41 |
| 11 | g17054.t1 | Coils | Coil | Coil | 179 | 192 | - |
| 10 | g17054.t1 | Gene3D | G3DSA:2.60.40.790 | - | 53 | 190 | 2.9E-31 |
| 13 | g17054.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 192 | - |
| 14 | g17054.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 192 | - |
| 2 | g17054.t1 | PANTHER | PTHR45640:SF23 | HEAT SHOCK PROTEIN 22-RELATED | 56 | 183 | 1.8E-44 |
| 3 | g17054.t1 | PANTHER | PTHR45640 | HEAT SHOCK PROTEIN HSP-12.2-RELATED | 56 | 183 | 1.8E-44 |
| 7 | g17054.t1 | PRINTS | PR00299 | Alpha crystallin signature | 74 | 94 | 1.8E-19 |
| 5 | g17054.t1 | PRINTS | PR00299 | Alpha crystallin signature | 96 | 109 | 1.8E-19 |
| 8 | g17054.t1 | PRINTS | PR00299 | Alpha crystallin signature | 111 | 130 | 1.8E-19 |
| 4 | g17054.t1 | PRINTS | PR00299 | Alpha crystallin signature | 133 | 154 | 1.8E-19 |
| 6 | g17054.t1 | PRINTS | PR00299 | Alpha crystallin signature | 163 | 178 | 1.8E-19 |
| 1 | g17054.t1 | Pfam | PF00011 | Hsp20/alpha crystallin family | 76 | 168 | 1.7E-26 |
| 15 | g17054.t1 | ProSiteProfiles | PS01031 | Small heat shock protein (sHSP) domain profile. | 61 | 169 | 20.771 |
| 9 | g17054.t1 | SUPERFAMILY | SSF49764 | HSP20-like chaperones | 77 | 167 | 2.41E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
