Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pyrimidodiazepine synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17068 g17068.t2 isoform g17068.t2 12383668 12385350
chr_4 g17068 g17068.t2 exon g17068.t2.exon1 12383668 12384311
chr_4 g17068 g17068.t2 cds g17068.t2.CDS1 12384260 12384311
chr_4 g17068 g17068.t2 exon g17068.t2.exon2 12384587 12385111
chr_4 g17068 g17068.t2 cds g17068.t2.CDS2 12384587 12385111
chr_4 g17068 g17068.t2 exon g17068.t2.exon3 12385169 12385350
chr_4 g17068 g17068.t2 cds g17068.t2.CDS3 12385169 12385350
chr_4 g17068 g17068.t2 TTS g17068.t2 12385416 12385416
chr_4 g17068 g17068.t2 TSS g17068.t2 NA NA

Sequences

>g17068.t2 Gene=g17068 Length=1351
ATGAGTGAGAATATAAACAAACTGGATATATTACGTGCTTTCGGTAAAATGTTTGCTTTT
CAAGCTAATGCATCAAAAATGTAAGAGAAGTAAACAAGAGATTTTTGATTATTTGCAAAA
TTTTTGTTATAAAAATATTAATTAATTGAGATATTATAGATGATTTTATAATATTTTTAG
CGCATTTTTGGAACAACAATGCAGTTTATATCTTCACTCTGGCTGGCATGATCTCGATCT
CGTTTAAATTTGGATAAAAATATTAATTATTGAATTTAATTAAATTAATTTTTCATAACA
CAATAATGTAAATTGTAGTAACAGTTGCATACATTTAAAGCGATATAACAAAATATTTAT
ATTACATAAAAATAAAGTAAACATGGTTACAGTTAACATTGGTGCGCTAAAATGTAGCTA
AAACTACAAAAATATCAAAAATTCAAAGCAGACAGTATTTCATAACTTTTTATCATTTTT
GATTACTCAAAAGTCATGCTTATTATTGAAAACTAATAATTTCTTATCTTTTAGCTTATC
TTTAATTTCAAAGCATATAAAAAGAACCACAAATCATTCAGTCGTTAATCGAATGTCAGC
AAGTGAACCAAAAATGACTACAAAAAGTCTTCATTTAACTAAAGGTTCATCCCAACCAAC
ATTTCCTGACAATGAAAACCTTCGACTTTATTCAATGAAATATTGTCCTTACGCTCATCG
AGCTCATTTGGTGCTTGATGCTAAAAACATTCCTTATCACACAGTTTTTATTAATTTAAC
TGAAAAACCCGAATGGTATCAAAAAGTCTCTGCACTTACAAAAGTTCCAGCTCTGGAATT
ACCAGAAGTTAAAGGAGATTCTTTGATTGAATCTTTGATTATTTGTGACTACATTGATGA
AAAATATCCACAAAATCAATTGAATTCCAAAGATTCATTAGAGAAAGCTCGTGACAGAAT
TTTAGTGCAAAGATTTGAAACATTGACTCCTGTCTTTGGTCGTTTTATTTATTGGAAAAA
TGAGGAAGAAAAGAATAAAATTATAGAAAAGCTCTATGCAGGATTGACAATTTTTGAGAC
AGAATTGAAGGAAAGAAATTCAAAATTCTTTGGTGGTGAAAAACCTAAAATGCTCGATTA
TATGATTTGGCCTTGGTTTGAAAGATTTGAATTGCTAAATTTTCTACTTGAACAAAAGTT
TGAATTAAATCATTTTTCAAAATTATCCACATGGTTTGATGGAATGATGAAAGATGAAGC
TGTGAAGAAAAATTTCATAAACATTGACGATCATTATAGATTTGTCAAAACGAGAAATTA
CGATAATGTTGCTGGATGTATAGAAAAGTAA

>g17068.t2 Gene=g17068 Length=252
MSASEPKMTTKSLHLTKGSSQPTFPDNENLRLYSMKYCPYAHRAHLVLDAKNIPYHTVFI
NLTEKPEWYQKVSALTKVPALELPEVKGDSLIESLIICDYIDEKYPQNQLNSKDSLEKAR
DRILVQRFETLTPVFGRFIYWKNEEEKNKIIEKLYAGLTIFETELKERNSKFFGGEKPKM
LDYMIWPWFERFELLNFLLEQKFELNHFSKLSTWFDGMMKDEAVKKNFINIDDHYRFVKT
RNYDNVAGCIEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g17068.t2 Gene3D G3DSA:3.40.30.10 Glutaredoxin 14 240 3.1E-77
9 g17068.t2 Gene3D G3DSA:1.20.1050.10 - 111 229 3.1E-77
11 g17068.t2 MobiDBLite mobidb-lite consensus disorder prediction 1 20 -
3 g17068.t2 PANTHER PTHR43968 - 10 239 8.4E-65
5 g17068.t2 PRINTS PR01625 Omega-class glutathione S-transferase signature 28 43 1.1E-17
4 g17068.t2 PRINTS PR01625 Omega-class glutathione S-transferase signature 105 119 1.1E-17
6 g17068.t2 PRINTS PR01625 Omega-class glutathione S-transferase signature 172 191 1.1E-17
2 g17068.t2 Pfam PF13417 Glutathione S-transferase, N-terminal domain 32 108 9.4E-21
1 g17068.t2 Pfam PF13410 Glutathione S-transferase, C-terminal domain 147 216 1.7E-6
13 g17068.t2 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 28 109 18.494
12 g17068.t2 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 114 246 16.445
14 g17068.t2 SFLD SFLDG00358 Main (cytGST) 30 220 4.7E-41
15 g17068.t2 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 30 220 4.7E-41
7 g17068.t2 SUPERFAMILY SSF52833 Thioredoxin-like 29 129 1.65E-23
8 g17068.t2 SUPERFAMILY SSF47616 GST C-terminal domain-like 113 241 3.62E-26

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004364 glutathione transferase activity MF
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed