Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pyrimidodiazepine synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17068 g17068.t3 isoform g17068.t3 12384202 12385350
chr_4 g17068 g17068.t3 exon g17068.t3.exon1 12384202 12384311
chr_4 g17068 g17068.t3 TSS g17068.t3 12384247 12384247
chr_4 g17068 g17068.t3 cds g17068.t3.CDS1 12384260 12384311
chr_4 g17068 g17068.t3 exon g17068.t3.exon2 12384587 12385057
chr_4 g17068 g17068.t3 cds g17068.t3.CDS2 12384587 12385057
chr_4 g17068 g17068.t3 exon g17068.t3.exon3 12385169 12385350
chr_4 g17068 g17068.t3 cds g17068.t3.CDS3 12385169 12385350
chr_4 g17068 g17068.t3 TTS g17068.t3 12385416 12385416

Sequences

>g17068.t3 Gene=g17068 Length=763
CTTATCTTTAATTTCAAAGCATATAAAAAGAACCACAAATCATTCAGTCGTTAATCGAAT
GTCAGCAAGTGAACCAAAAATGACTACAAAAAGTCTTCATTTAACTAAAGGTTCATCCCA
ACCAACATTTCCTGACAATGAAAACCTTCGACTTTATTCAATGAAATATTGTCCTTACGC
TCATCGAGCTCATTTGGTGCTTGATGCTAAAAACATTCCTTATCACACAGTTTTTATTAA
TTTAACTGAAAAACCCGAATGGTATCAAAAAGTCTCTGCACTTACAAAAGTTCCAGCTCT
GGAATTACCAGAAGTTAAAGGAGATTCTTTGATTGAATCTTTGATTATTTGTGACTACAT
TGATGAAAAATATCCACAAAATCAATTGAATTCCAAAGATTCATTAGAGAAAGCTCGTGA
CAGAATTTTAGTGCAAAGATTTGAAACATTGACTCCTGTCTTTGGTCGTTTTATTTATTG
GAAAAATGAGGAAGAAAAGAATAAAATTATAGAAAAGCTCTATGCAGGATTGACAATTTT
TGAGACAGAATTGAAGGAAAGAAATTCAAAATTCTTTGGTGAATTGCTAAATTTTCTACT
TGAACAAAAGTTTGAATTAAATCATTTTTCAAAATTATCCACATGGTTTGATGGAATGAT
GAAAGATGAAGCTGTGAAGAAAAATTTCATAAACATTGACGATCATTATAGATTTGTCAA
AACGAGAAATTACGATAATGTTGCTGGATGTATAGAAAAGTAA

>g17068.t3 Gene=g17068 Length=234
MSASEPKMTTKSLHLTKGSSQPTFPDNENLRLYSMKYCPYAHRAHLVLDAKNIPYHTVFI
NLTEKPEWYQKVSALTKVPALELPEVKGDSLIESLIICDYIDEKYPQNQLNSKDSLEKAR
DRILVQRFETLTPVFGRFIYWKNEEEKNKIIEKLYAGLTIFETELKERNSKFFGELLNFL
LEQKFELNHFSKLSTWFDGMMKDEAVKKNFINIDDHYRFVKTRNYDNVAGCIEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g17068.t3 Gene3D G3DSA:3.40.30.10 Glutaredoxin 17 222 7.2E-55
7 g17068.t3 Gene3D G3DSA:1.20.1050.10 - 111 211 7.2E-55
9 g17068.t3 MobiDBLite mobidb-lite consensus disorder prediction 1 20 -
2 g17068.t3 PANTHER PTHR43968 - 10 221 3.2E-48
4 g17068.t3 PRINTS PR01625 Omega-class glutathione S-transferase signature 28 43 4.3E-6
3 g17068.t3 PRINTS PR01625 Omega-class glutathione S-transferase signature 105 119 4.3E-6
1 g17068.t3 Pfam PF13417 Glutathione S-transferase, N-terminal domain 32 108 8.1E-21
10 g17068.t3 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 28 109 18.494
11 g17068.t3 SFLD SFLDG00358 Main (cytGST) 30 178 7.0E-31
12 g17068.t3 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 30 178 7.0E-31
5 g17068.t3 SUPERFAMILY SSF52833 Thioredoxin-like 29 129 1.38E-23
6 g17068.t3 SUPERFAMILY SSF47616 GST C-terminal domain-like 113 223 1.81E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004364 glutathione transferase activity MF
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed