Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Pyrimidodiazepine synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g17068 g17068.t5 TSS g17068.t5 12384247 12384247
chr_4 g17068 g17068.t5 isoform g17068.t5 12384284 12385350
chr_4 g17068 g17068.t5 exon g17068.t5.exon1 12384284 12384311
chr_4 g17068 g17068.t5 exon g17068.t5.exon2 12384587 12385111
chr_4 g17068 g17068.t5 cds g17068.t5.CDS1 12384637 12385111
chr_4 g17068 g17068.t5 exon g17068.t5.exon3 12385177 12385350
chr_4 g17068 g17068.t5 cds g17068.t5.CDS2 12385177 12385190
chr_4 g17068 g17068.t5 TTS g17068.t5 12385416 12385416

Sequences

>g17068.t5 Gene=g17068 Length=727
ACTACAAAAAGTCTTCATTTAACTAAAGGTTCATCCCAACCAACATTTCCTGACAATGAA
AACCTTCGACTTTATTCAATGAAATATTGTCCTTACGCTCATCGAGCTCATTTGGTGCTT
GATGCTAAAAACATTCCTTATCACACAGTTTTTATTAATTTAACTGAAAAACCCGAATGG
TATCAAAAAGTCTCTGCACTTACAAAAGTTCCAGCTCTGGAATTACCAGAAGTTAAAGGA
GATTCTTTGATTGAATCTTTGATTATTTGTGACTACATTGATGAAAAATATCCACAAAAT
CAATTGAATTCCAAAGATTCATTAGAGAAAGCTCGTGACAGAATTTTAGTGCAAAGATTT
GAAACATTGACTCCTGTCTTTGGTCGTTTTATTTATTGGAAAAATGAGGAAGAAAAGAAT
AAAATTATAGAAAAGCTCTATGCAGGATTGACAATTTTTGAGACAGAATTGAAGGAAAGA
AATTCAAAATTCTTTGGTGGTGAAAAACCTAAAATGCTCGATTATATGATTTGGCCTTGG
TTTGAAAGATTTGAATTTTCTACTTGAACAAAAGTTTGAATTAAATCATTTTTCAAAATT
ATCCACATGGTTTGATGGAATGATGAAAGATGAAGCTGTGAAGAAAAATTTCATAAACAT
TGACGATCATTATAGATTTGTCAAAACGAGAAATTACGATAATGTTGCTGGATGTATAGA
AAAGTAA

>g17068.t5 Gene=g17068 Length=162
MKYCPYAHRAHLVLDAKNIPYHTVFINLTEKPEWYQKVSALTKVPALELPEVKGDSLIES
LIICDYIDEKYPQNQLNSKDSLEKARDRILVQRFETLTPVFGRFIYWKNEEEKNKIIEKL
YAGLTIFETELKERNSKFFGGEKPKMLDYMIWPWFERFEFST

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g17068.t5 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 76 0.0000000
8 g17068.t5 Gene3D G3DSA:1.20.1050.10 - 77 160 0.0000000
3 g17068.t5 PANTHER PTHR43968 - 1 161 0.0000000
5 g17068.t5 PRINTS PR01625 Omega-class glutathione S-transferase signature 71 85 0.0000000
4 g17068.t5 PRINTS PR01625 Omega-class glutathione S-transferase signature 138 157 0.0000000
2 g17068.t5 Pfam PF13417 Glutathione S-transferase, N-terminal domain 1 74 0.0000000
1 g17068.t5 Pfam PF13410 Glutathione S-transferase, C-terminal domain 113 160 0.0000063
11 g17068.t5 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 75 16.5590000
10 g17068.t5 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 80 162 12.9980000
12 g17068.t5 SFLD SFLDG00358 Main (cytGST) 2 159 0.0000000
13 g17068.t5 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 2 159 0.0000000
6 g17068.t5 SUPERFAMILY SSF52833 Thioredoxin-like 2 95 0.0000000
7 g17068.t5 SUPERFAMILY SSF47616 GST C-terminal domain-like 79 160 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004364 glutathione transferase activity MF
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF
GO:0005737 cytoplasm CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed