Chromosome | Gene | Transcript | Category | ID | Start | End |
---|---|---|---|---|---|---|
chr_4 | g17073 | g17073.t1 | TSS | g17073.t1 | 12398233 | 12398233 |
chr_4 | g17073 | g17073.t1 | isoform | g17073.t1 | 12398772 | 12399524 |
chr_4 | g17073 | g17073.t1 | exon | g17073.t1.exon1 | 12398772 | 12399524 |
chr_4 | g17073 | g17073.t1 | cds | g17073.t1.CDS1 | 12398772 | 12399524 |
chr_4 | g17073 | g17073.t1 | TTS | g17073.t1 | 12400231 | 12400231 |
>g17073.t1 Gene=g17073 Length=753
ATGTTCAAAAATGAAAATGTTTTAATTATTGGAAGTGGTGCAAGTGCATTTGATATGGTC
GTTGCAATTGATAAAGTTGCAAATAAACTTACTTGGGTACATAAAATTCAACAAACTAAT
GGAACACCAAGAAGCATAAAATTATCACCAACATCGACCGTAAAAAAATATTCAATCAAA
AAATTTACAAAAACTGGTGCAGAATTTGAAGATGGAAGTTTTGAGGAATTTTCAATTATT
GTATTTGCAACAGGATATGATTTTACTTTTCCATTTTTATCAGTTGATTCTGGAATTTCA
GTTTATGACAAATGTGTTCAACCACTTTATAAACAATGCATTAATGCAAATAGACCATCA
TTAGCCATCATTGGTTTACCTTATTTTACACTTCGAATTCCTTTGTTTGAAATTCAAATT
AAATTTTGTATTGAATTTTGGTCAGGAAGAAGAAAATTCCCAAATAGAAATGAAATGCTG
AAAGACATTAAAAAAGATTTTCAAAATCGAAATGTTGACATTGAAGGAAATAGTCATAAA
GTTCATTATTTGGGATTTCAAAATCATCATTTGTATTATGAAGATTTAGCAAGAACTGCA
GGAATTGAAAATGTCAAACCATCACTTTTAAAATTATCTACACACCTTGTAACGCATACA
TTTAAAAATTATCACACATTTCGTGATTTTAAATATAAAATTTTAAATGATTTTGAATTT
TCTTGTGAATGTTTTGAAAAAGAGAATAATTGA
>g17073.t1 Gene=g17073 Length=250
MFKNENVLIIGSGASAFDMVVAIDKVANKLTWVHKIQQTNGTPRSIKLSPTSTVKKYSIK
KFTKTGAEFEDGSFEEFSIIVFATGYDFTFPFLSVDSGISVYDKCVQPLYKQCINANRPS
LAIIGLPYFTLRIPLFEIQIKFCIEFWSGRRKFPNRNEMLKDIKKDFQNRNVDIEGNSHK
VHYLGFQNHHLYYEDLARTAGIENVKPSLLKLSTHLVTHTFKNYHTFRDFKYKILNDFEF
SCECFEKENN
Transcript | Database | ID | Name | Start | End | E.value | |
---|---|---|---|---|---|---|---|
6 | g17073.t1 | Gene3D | G3DSA:3.50.50.60 | - | 1 | 73 | 8.1E-6 |
5 | g17073.t1 | Gene3D | G3DSA:3.50.50.60 | - | 74 | 248 | 2.4E-27 |
2 | g17073.t1 | PANTHER | PTHR23023 | DIMETHYLANILINE MONOOXYGENASE | 2 | 207 | 7.1E-30 |
1 | g17073.t1 | Pfam | PF00743 | Flavin-binding monooxygenase-like | 56 | 212 | 8.1E-19 |
8 | g17073.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
9 | g17073.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
10 | g17073.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 17 | - |
11 | g17073.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
7 | g17073.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 250 | - |
4 | g17073.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 2 | 83 | 1.02E-9 |
3 | g17073.t1 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 66 | 238 | 9.06E-9 |
IUPRED3 score over 0.5 is predictive of a disordered region.
GOID | TERM | ONTOLOGY |
---|---|---|
GO:0050661 | NADP binding | MF |
GO:0050660 | flavin adenine dinucleotide binding | MF |
GO:0004499 | N,N-dimethylaniline monooxygenase activity | MF |
GO:0055114 | NA | NA |
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
TPM values are indicated as average +/- STDEV.
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed